Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq56 111 2e-18 seq11 111 2e-18 seq19 105 1e-16 seq16 105 1e-16 seq4 105 1e-16 seq14 96.9 5e-14 >seq56 Length=268076 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || | |||||| | | || || ||| ||| Sbjct 230258 TGTATTTAGTGACCGCCTTGGTTCCTTCGCTTATAGCGTGCTTTGAAAGCTCACCGGGCA 230317 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||| || || || | || |||||| |||| | |||| | Sbjct 230318 ATAGGAGACGAACGGCTGTCTGAATTTCACGAGAGCTGATCGTACTGCGTTGGTTAATCT 230377 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||| | | ||||| |||| | ||||| ||||| |||| Sbjct 230378 GTGCCAGACGAGACGCCTCAGCAGCAATGCGCTCGAATACATCGTTCACAAAACTATTCA 230437 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||| | |||| || ||||||| || || || |||||||| |||||||||| Sbjct 230438 TAATCGACATGGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGCTTTAGCACCTTGT 230497 Query 1485710 A 1485710 | Sbjct 230498 A 230498 >seq11 Length=1611644 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || || || ||||| ||| |||||| || |||||||| ||| Sbjct 311357 TGTATTTTGTAACAGCTTTTGTCCCCTCGCTGACTGCGTGCTTGCTTAGTTCGCCAGGCA 311298 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| |||||||| | | || || | ||| || || | Sbjct 311297 ACAGCAGGCGCACAGCAGTCTGAATCTCGCGAGAACTTATGGTATGGCGATTATTGTAGT 311238 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | |||| || |||| | ||||||||||| ||||| Sbjct 311237 GCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTGACAAAGCTGTTCA 311178 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | |||| || || || ||| || ||||||||||| | ||||||| Sbjct 311177 TAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGCTTCAAAACCTTGT 311118 Query 1485710 A 1485710 | Sbjct 311117 A 311117 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| ||||| ||||| || |||||||||| || || ||| || ||| Sbjct 1498991 TACTTGGTGACAGCCTTTGTACCTTCGCTGACGGCGTGCTTGCACAATTCTCCTGGCAGC 1499050 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || | || ||||| || || || | || || |||| || |||||| | Sbjct 1499051 AGTAGACGAGCAGCCGTCTGTATTTCTCGAGAGCTAATAGTGTGACGATTGTTATATTGG 1499110 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || || || || || | ||| | |||| | ||||| ||||| ||||| Sbjct 1499111 GTGAGACGAGAAGCTTCCATGGCAATGTGATCGAAGACATCGTTAACAAAGCTATTCATA 1499170 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 |||||||| | |||| || ||||| ||| ||||| || ||||| | ||||||||| Sbjct 1499171 ATCGACATAGCTTTGCTGCTAATGCCAGTGTCCGGGTGTACTTGCTTCAAAACCTTGTAA 1499230 Query 1485712 A 1485712 | Sbjct 1499231 A 1499231 >seq19 Length=1155537 Score = 105 bits (116), Expect = 1e-16 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || |||||||||| || ||| || || | | Sbjct 1062160 TGTACTTAGTCACCGCCTTCGTTCCTTCGCTGACGGCGTGCTTGCTCAGCTCTCCTGGAA 1062219 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || ||||| || | | || ||| || | || |||||| | Sbjct 1062220 GCAAAAGACGGACGGCCGTTTGGATTTCTCTTGAGCTGATGGTATGACGGTTGTTATAGT 1062279 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || ||| || || || |||| | || || ||||| ||||| Sbjct 1062280 GGGCCAGACGAGATGCTTCGCCACCAATCCGATCGAATACATCATTTACAAAGCTGTTCA 1062339 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| ||| || ||||||| |||||| || || || || || ||||||| Sbjct 1062340 TGATCGACATCGCCTTGCTGCTGATGCCCGTGTCGGGATGAACTTGTTTCAGTACCTTGT 1062399 Query 1485710 AAA 1485712 ||| Sbjct 1062400 AAA 1062402 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || |||||||||| || ||| || || | | Sbjct 1027254 TGTACTTAGTCACCGCCTTCGTTCCTTCGCTGACGGCGTGCTTGCTCAGCTCTCCTGGAA 1027195 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || ||||| || | | || ||| || | || |||||| | Sbjct 1027194 GCAAAAGACGGACGGCCGTTTGGATTTCTCTTGAGCTGATGGTATGACGGTTGTTATAGT 1027135 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || ||| || || || |||| | || || ||||| ||||| Sbjct 1027134 GGGCCAGACGAGATGCTTCGCCACCAATTCGATCGAAGACATCATTCACAAAGCTGTTCA 1027075 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| |||| || |||||| |||||| || || || || || ||||||| Sbjct 1027074 TGATCGACATCGCTTTGCTGCTAATGCCCGTGTCGGGATGAACTTGTTTCAGTACCTTGT 1027015 Query 1485710 A 1485710 | Sbjct 1027014 A 1027014 Score = 89.7 bits (98), Expect = 8e-12 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || ||||| || || || || || || || || || || | | Sbjct 983133 TACTTGGTCACCGCCTTCGTTCCTTCGCTTACAGCATGTTTGCTAAGCTCTCCCGGAAGC 983074 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||||| ||||| || ||||| || | | || ||| || | || |||||| | | Sbjct 983073 AGAAGGCGGACGGCCGTTTGGATTTCTCTTGAGCTGATGGTATGACGGTTGTTATAGTGG 983014 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || || ||| || || || |||| | || || ||||| ||||||| Sbjct 983013 GCCAGACGAGATGCTTCGCCACCAATTCGATCGAATACATCATTTACAAAGCTGTTCATG 982954 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||||||| ||| || ||||||| |||||| || || ||||| || |||||||| Sbjct 982953 ATCGACATCGCCTTGCTGCTGATGCCCGTGTCGGGATGAACTTGCTTCAGTACCTTGTA 982895 >seq16 Length=1253240 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || || || ||||| ||| |||||| || |||||||| ||| Sbjct 513164 TGTATTTTGTAACAGCTTTTGTCCCCTCGCTGACTGCGTGCTTGCTTAGTTCGCCAGGCA 513223 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| || | | || || | ||| || || | Sbjct 513224 ACAGCAGGCGCACAGCAGTCTGAATCTCACGAGAACTTATGGTATGGCGATTATTGTAGT 513283 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | |||| || |||| | ||||||||||| ||||| Sbjct 513284 GCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTGACAAAACTGTTCA 513343 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | |||| || || || ||| || ||||||||||| | ||||||| Sbjct 513344 TAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGCTTCAAAACCTTGT 513403 Query 1485710 A 1485710 | Sbjct 513404 A 513404 >seq4 Length=2444288 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || || || ||||| ||| |||||| || |||||||| ||| Sbjct 2034071 TGTATTTTGTAACAGCTTTTGTCCCCTCGCTGACTGCGTGCTTGCTTAGTTCGCCAGGCA 2034012 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| || | | || || | ||| || || | Sbjct 2034011 ACAGCAGGCGCACAGCAGTCTGAATCTCACGAGAACTTATGGTATGGCGATTATTGTAGT 2033952 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | |||| || |||| | ||||||||||| ||||| Sbjct 2033951 GCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTGACAAAACTGTTCA 2033892 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | |||| || || || ||| || ||||||||||| | ||||||| Sbjct 2033891 TAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGCTTCAAAACCTTGT 2033832 Query 1485710 A 1485710 | Sbjct 2033831 A 2033831 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| ||||| |||||||| |||||||||| || || ||| ||| ||| Sbjct 2372907 TACTTGGTGACAGCCTTTGTACCCTCGCTGACGGCGTGCTTGCTCAATTCTCCGGGCAAC 2372966 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || || || ||||| || || || | | || |||| || |||||| | Sbjct 2372967 AGTAGACGAACAGCCGTCTGTATTTCTCGAGAACTAATAGTGTGACGGTTGTTATACTGG 2373026 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || || || || | ||||| |||| | ||||| ||||| ||||| Sbjct 2373027 GCGAGACGAGAAGCTTCCATGGCAATGCGATCGAAGACATCGTTAACAAAGCTATTCATA 2373086 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 |||||||| | |||| || ||||| ||| ||||| || ||||| | ||||||||| Sbjct 2373087 ATCGACATAGCTTTGCTGCTAATGCCAGTGTCCGGGTGTACTTGCTTCAAAACCTTGTAA 2373146 Query 1485712 A 1485712 | Sbjct 2373147 A 2373147 >seq14 Length=1477134 Score = 96.9 bits (106), Expect = 5e-14 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| | || ||||| || || || || |||||| || || || || ||| Sbjct 1445548 TGTACTTCGACACTGCCTTTGTTCCTTCACTTACTGCGTGCTTGCAGAGCTCTCCCGGCA 1445607 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| | | || |||||||| || ||| | || | Sbjct 1445608 CAAGAAGACGGACTGCCGTCTGAATCTCTCTTGAGCTGATCGTGTCTCGATTGGT-GTAC 1445666 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || ||||| ||||| | || ||||||| || |||||||||||| |||| Sbjct 1445667 TGGGCGAGGCGAGACGCCTCTTCAGCTATTCGGTCGAACACGTCGTTGACAAAGCTGTTC 1445726 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || || ||||||| ||| || ||||||| ||| || || || ||||| || |||||| Sbjct 1445727 ATAATAGACATCGCCTTGCTGCTGATGCCCGTGTCAGGATGGACTTGCTTCAGTACCTTG 1445786 Query 1485709 TA 1485710 || Sbjct 1445787 TA 1445788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916213849384334