Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq24 111 1e-19 >seq24 Length=829597 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| |||||| |||| || | |||||||| |||||||| ||||||||||| |||| ||| Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| || |||| | ||| || || | || ||||| || || || ||||| ||||| Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| ||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | ||||| | |||||||| || ||||| ||||||||||| |||| || | Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || | || | |||||| || | || |||||||| |||||||||||||| || || Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || |||||||| |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 100 bits (110), Expect = 2e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| ||||||||||||||||| |||||||| |||||| | ||| ||| | || | || Sbjct 294035 TGCTGGTCCGGCGGAATACCCTCCTTGTCTTG-AATTTTAGTTTTAACATTCTCAATGGT 293977 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || | |||||||| || || || || ||||| || || ||||| ||||| || || Sbjct 293976 GTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTGTCAATGTTTTGACAAAAATTTG 293917 Query 29784 CATT 29787 |||| Sbjct 293916 CATT 293913 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || || ||||| ||||||||||| ||||| ||||||| |||| || Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTA-TTTTAGT 294278 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| | || | ||| || || |||| ||||| || || || || |||||||| | Sbjct 294277 CTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAG 294218 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| |||||||||||||| Sbjct 294217 AGTTTTCACAAATATCTGCAT 294197 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || |||| ||||||||||| || ||||||||||||||||| | || Sbjct 295471 CCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCTTCGCC 295412 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || |||||| || || ||| | || ||||| || || ||||| || || || | Sbjct 295411 TTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTGTCAGC 295352 Query 29767 GTTTTAACAAATATCTGCATT 29787 ||||| || ||||| |||||| Sbjct 295351 GTTTTCACGAATATTTGCATT 295331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || |||||||| || || || || || || ||||| ||| ||||| Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTG-AATCTTTGT 293709 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || || | || | ||||| || | || ||||| || |||||||||||||| || | Sbjct 293708 CTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAG 293649 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| |||||||||||||| Sbjct 293648 CGTTTTCACAAATATCTGCAT 293628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217763373146