Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19 251 5e-61 seq51 116 3e-20 seq43 98.7 7e-15 >seq19 Length=1155537 Score = 251 bits (278), Expect = 5e-61 Identities = 881/1360 (65%), Gaps = 34/1360 (3%) Strand=Plus/Minus Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 |||||||| || | ||| || || ||| | | ||||| ||| | | ||||| Sbjct 888649 TTATCTTTGGTCATCGCTCGCTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 888590 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTC----TATC 281652 || |||||||| ||||| ||| ||| || || || || || || | |||| Sbjct 888589 TCGGAATAAGTAGTAAACACTTGGGAAACCTTCGTTGGTATCGTAGTATTACGCTTTATC 888530 Query 281653 AATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 ||| | ||||||| |||||| || ||||||| |||||||| | || || || || Sbjct 888529 AATGCT----GTCATAACACCACCGGCGGTTTCTATGCCAAGAGACAACGGCGTCACGTC 888474 Query 281713 AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAA 281771 | || | || | ||| | | |||| | | || |||||| |||| || || | Sbjct 888473 CAAAAGCAAAAGGTCTTGCACTGCCTCATGCTTATCGCCTGACAAGA-TAGCCGCCTGTA 888415 Query 281772 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 281831 ||||| || || || || || ||||| ||||| | | | || | | || |||| Sbjct 888414 CCGCAGCCCCGTAAGCGACGGCCTCATCCGGATTGATGCTCTTGTTCAACTCCTTTCCAT 888355 Query 281832 TGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 ||||||| | ||| | || || | ||||| |||||||||| || || ||||| || Sbjct 888354 TGAAAAAGTCTTGCAGCAACTTTTGA-ACCTTCGGAATACGAGTCGAGCCACCAACCAAC 888296 Query 281891 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGG 281949 |||| || ||||||||||| |||||||| || | ||| | | | || |||||||| || Sbjct 888295 ACAACATCGTGCACCTGTGACTTATCCAGCTTGGCATCGCGAAGAGAC-TTTTCAACTGG 888237 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 || | | | | ||||| || | ||||| |||||||| || | ||| | || Sbjct 888236 ATCCAAAGTGGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGT 888177 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 | | ||| || || || ||| ||||| |||| ||| || | | |||||| | Sbjct 888176 GGTGTAATAGTCGATGCCCTCGTACAAACTGTCAATTTCTATGCTCGCTTGAGT----GG 888121 Query 282070 AGATAGTGCACGT----TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTG 282125 || || | |||| || || ||||| || ||||| | | | || ||||| | Sbjct 888120 AGCTACTCAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGCAAACGACGCAAGGC--ACG 888063 Query 282126 CTGATT----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT 282181 |||| || || || | |||| ||| | |||||| || | ||| | || Sbjct 888062 AGGATTTCCCGA--CATGTCCTTCTTATTTTTGCGCTTGAACTCGGCCACAAAGTGGGTA 888005 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || | ||||| ||||| || ||||| || | | ||||| || | ||||| | ||| Sbjct 888004 ACCATGCGATTGTCAAAGTCCTCACCGCCAAGATGAGTATCGCCCGCCGTAGACTTCACT 887945 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | ||||| || | | || || | ||||| ||| || || |||| || Sbjct 887944 TCGAATATACCATCCTCGATTGTCAGAATGGACACATCGAAGGTACCGCCGCCCAGGTCG 887885 Query 282302 AAAATAAGTACATTCATTTC-TTTGT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 || || ||||| ||| || || | | || || || | ||||| || | ||| | Sbjct 887884 AAGATCAGTACGTTCCGCTCGCCCGTACCT--TTCTTGTCCAACCCATAGGCGATAGCGG 887827 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 |||| || || ||||| || |||| | ||||| | |||| ||| | ||||| |||| Sbjct 887826 CAGCGGTCGGCTCATTGATGATTCGAAGGACATTCAATCCAGAAATGGTACCTGCGTCTT 887767 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || || || ||||| || || || || |||||||| |||||||| || | | Sbjct 887766 TCGTTGCCTGCCTCTGAGAATCATTGAAGTAGGCCGGAACAGTGATAACGGCGTCCTTCA 887707 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | ||| || | |||||| ||| || | |||||||||| || | ||| | | Sbjct 887706 CGGTTTTACCCAAATAAGCTTCTGCCGTCTCTTTCATTTTAACCAATACCATAGCGCTGA 887647 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 | ||| |||| | | ||||| || || ||| || | || | ||| || Sbjct 887646 CCTCTTCGGGAGTAAACATCTTGGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGC 887587 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 || || | | || || || ||||||| ||||| || || || ||| ||||| Sbjct 887586 CTCCGTCACTGACCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCAGCGTCAT 887527 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 | || || || | ||| ||||| || |||| || ||| ||||| | || Sbjct 887526 CGTATCTTCGCCCGATCAGTCGCTTTGCGTCGAAAACGGTGTTGTGAGGATTCAAGGCGA 887467 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||| | ||||| ||||| || ||||| || || || ||||| | ||||| || Sbjct 887466 CTTGGTTCTTGGCGGCATCGCCGATCAGTCTCTCCGTGTCCGTAAAAGCCACATAGCTTG 887407 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || ||||| || || || || || || || || || || || |||| || | |||| Sbjct 887406 GCGTGGTGCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTGCCATGCTGGAACACAC 887347 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | || ||||| | || || ||||| ||||| |||| ||| Sbjct 887346 CAACGCAACTGTACGTCGTACCTAAGTCAATTCCAACAGC 887307 >seq51 Length=261480 Score = 116 bits (128), Expect = 3e-20 Identities = 310/468 (66%), Gaps = 7/468 (1%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || || | | ||| | || ||||| ||| | |||||||| || || || Sbjct 32473 GGTTCGTTGATGATCCGAAGAACGGTTAGGCCAGCGATTGTACCTGCATCCTTTGTTGCC 32532 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 |||| ||| | ||| || ||||| ||||| || |||| || || | ||| || | || Sbjct 32533 TGTCGTTGGGCATCATTGAAATAGGCAGGCACCGTAACCACAGCGTGTGTGACCTTCTTG 32592 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 |||| ||| || || |||| |||||||| | || | ||| | || || | || Sbjct 32593 CCAAGATACGCCTCCGCAGTTTCCTTCATTTTCGTCAACACCATAGCCGATATCTCCTCG 32652 Query 282548 GGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 || || | ||| || ||| | ||| |||| | ||||| | | Sbjct 32653 GGCGAGAAAGTCTTTTTCTCCTTTCCTACGGTTACCTCAACGTGCGGTTTGCC-CGATTG 32711 Query 282608 TT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 282666 || ||| ||||| |||||||| ||| ||| | ||| | ||||| |||| | || Sbjct 32712 TTCAATCACTTTGAATGGCCACATTTTGCGATCGGCTTGTAAACTTTTGTCAGACCATTC 32771 Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTA-ACTGCAGCTTGAT 282725 | ||| || | |||||| || ||||||| ||||| ||||| || || || ||| Sbjct 32772 ACGACCGATCATTCGTTTGGCGTCAAAAACGGTATTTTCGGGATTCGACGTCAACT-GAT 32830 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTA---AATGAAACATATGATGGAG 282782 ||||| ||||| || || ||| |||| || | | || | || ||||| |||| Sbjct 32831 TCTTGGCCGCATCGCCTATTAGACGTTCACCTTCGGGAGTGAACGCCACGTATGACGGAG 32890 Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 282830 | | ||||| ||||| || || |||||||||||||| |||||||| Sbjct 32891 TGATCCGATTGCCTTGGTCGTTGGCAATAATTTCAACGCGACCATTTT 32938 >seq43 Length=385820 Score = 98.7 bits (108), Expect = 7e-15 Identities = 123/166 (74%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 432277 AAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATA 432336 |||| ||| ||| ||||| ||||||||| |||| || | |||||||| | || ||| Sbjct 375985 AAAGGCTGAAAGGCAAAGAGGGTCGTATTCGAGGCAACCTTATGGGAAAAAGAGTTGATT 376044 Query 432337 TGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGA--AGTTGG-TG 432393 | || ||| | ||||| || ||| | ||||||||| |||| || ||| |||||| || Sbjct 376045 TCTCAGCAAGGACAGTGATCACTCCCGATCCTAATCTTGC---CATTGACCAGTTGGGTG 376101 Query 432394 TTCCTCTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 |||| | |||||| ||||||||||| | ||||||||| || Sbjct 376102 TTCCAAAGACTATTGCCCAAAATCTTACTGTACCCGAAATTGTTAC 376147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740615376693156