Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq24 131 3e-25 seq22 89.7 1e-12 >seq24 Length=829597 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||||||||||| || ||||||||||| || |||||||||||||||||||||| Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTC 293708 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || || || ||||||| ||||| || ||||| |||| | Sbjct 293707 TTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGC 293648 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 293647 GTTTTCACAAATATCTGCAT 293628 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| |||| | |||||||||||| || || ||||||||||| ||||| || Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || |||||||| || || || || ||||||| ||||| |||||||| ||| Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || || || ||||| || |||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCATT 294762 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 ||| | ||||||| || ||||| || || | |||||||| || ||||| || ||||||| Sbjct 295198 CTTGTTGTTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTAT 295139 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 |||||||||| | ||||| || || |||||||| || || |||||||| || || | Sbjct 295138 CTTGAATCTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTG 295079 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || |||| || || ||||| || ||||| Sbjct 295078 TTTTTCCGGTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| |||||||| || || || ||||| |||||||| || || | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| ||||| ||||| ||||||| || || |||||||| || | Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 |||| || || ||||| || | || || || || || || || ||||| |||||||| | Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | | ||| ||||| ||||| || || || |||||||| | || || |||||||||| Sbjct 293998 TAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTG 293939 Query 82786 TCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| || |||||| Sbjct 293938 TCAATGTTTTGACAAAAATTTGCATT 293913 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | || ||||| ||||| ||||| || || || || ||||| ||| Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || || || || ||||| | ||||| || ||||||||||| Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| |||||||| |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| |||||||| |||| | || |||||||| || || || || || || || || || Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||| || |||||||| ||||| || || ||||| | || || || || || || Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | |||||| || ||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 >seq22 Length=1093107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || || ||||||||| |||| | ||| ||| Sbjct 630082 ATACCTTCTTTGTCCTGTATCTTGGCCTTCACGGTTTCAATCGGATCACATGCTTCCACT 630023 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || |||| |||||| ||||| |||||||| Sbjct 630022 TCCAAAGTGATTGTCTTTCCAGTCAGCGTCTTCACAAAGATCTGCAT 629976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823350623734