Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 8e-15 >seq43 Length=385820 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 || |||||||| | || || ||||| ||||||||||| ||||||| | || | Sbjct 375891 TTGCAATATCACGTGGCCACTTTAATTGATAATGAAATACCTGGAATACCTCGAGCTACG 375950 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 || | |||||| | || | ||| | | |||| | | ||||| |||||||||||| Sbjct 375951 CATAAATCTGGTCGGCCACTGAAGTCGCTAAAGCAAAGGCTGAAAGGCAAAGAGGGTCGT 376010 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 |||||||| || || ||||||||| | |||||||| ||||| | || ||||| || Sbjct 376011 ATTCGAGGCAACCTTATGGGAAAAAGAGTTGATTTCTCAGCAAGGACAGTGATCACTCCC 376070 Query 305066 GATTCT 305071 ||| || Sbjct 376071 GATCCT 376076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808146952066