Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24 100 3e-16 >seq24 Length=829597 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 |||| |||||||| ||||| || || |||||||||||||| |||||| | |||| | Sbjct 293184 AGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTCTTCACAT 293125 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 ||| | | |||| |||||| ||||||| ||| | ||||| || || || ||||| | Sbjct 293124 TTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGTGTTTTCA 293065 Query 132111 TGAAAATCTGCAT 132123 |||||||||||| Sbjct 293064 CGAAAATCTGCAT 293052 Score = 100 bits (110), Expect = 3e-16 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG-GTAATTT 132038 |||||| | | | |||| ||||| |||||||| || ||||| ||||| || ||| || Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTA--TT 294565 Query 132039 TTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCA 132097 ||||||| ||| | ||| | |||||| | |||||||||||||| || | ||||| ||| Sbjct 294564 TTTGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCA 294505 Query 132098 GTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || | ||| |||||||| Sbjct 294504 GTGAGCGTCTTAACGAATATCTGCAT 294479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131982 TACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTT 132041 |||||| | ||||||| ||||| ||||||||||| || ||||| ||||| ||| ||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101 |||| | || | || |||| |||||| ||||| | ||| | ||||| || |||| Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 132102 GAGTTTTTATGAAAATCTGCATG 132124 | ||||| | || ||||||||| Sbjct 293649 GCGTTTTCACAAATATCTGCATG 293627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||||| | | |||| || ||||||||||| || |||||||| ||||| |||||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 ||||| | ||| | ||| || | ||||||||||| | ||| | || || |||||| Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123 | |||||| | ||||| ||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCAT 294763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 131983 ACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC-GGTAATTTTTT 132041 ||||| | |||| || ||||||||||| || || || ||||||||||| ||| |||| Sbjct 294337 ACCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTA--TTTTA 294280 Query 132042 GT-TTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 || |||| | || | |||||| | ||| |||||||| | ||| | || || ||||| Sbjct 294279 GTCTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTA 294220 Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123 |||||||| | || |||||||| Sbjct 294219 AGAGTTTTCACAAATATCTGCAT 294197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609376962160