Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq108 80.6 8e-12 seq95 80.6 8e-12 seq23 80.6 8e-12 seq19 80.6 8e-12 seq14 80.6 8e-12 seq6 80.6 8e-12 seq1 80.6 8e-12 >seq108 Length=24242 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 4146 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 4202 >seq95 Length=54290 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 37812 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 37756 >seq23 Length=1044211 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 913265 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 913209 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 1041598 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 1041654 >seq19 Length=1155537 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 1119545 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 1119601 >seq14 Length=1477134 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 5606 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 5662 >seq6 Length=2290552 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 2090843 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 2090899 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 2094490 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 2094546 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 2109390 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 2109446 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 2126356 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 2126412 >seq1 Length=4309324 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||||||| ||||||| | ||||| Sbjct 26151 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCGATCCCGG 26095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849546953370