Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20 116 5e-20 seq11 96.9 5e-14 seq16 91.5 2e-12 seq4 91.5 2e-12 >seq20 Length=1136993 Score = 116 bits (128), Expect = 5e-20 Identities = 222/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 || ||||||| || | |||||||| ||||| || ||||| || ||||| ||||| |||| Sbjct 122624 TGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATAGCCATAGAGAACATTCACTCGGAAA 122683 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 || |||||||| ||||| ||| | | ||| | ||| ||| ||| || Sbjct 122684 TGTATAGCCTCCTGATTGACACGTACATTCAAGACGAAGCGGAGCGTTACCGCCTGTTCA 122743 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||| ||||| || | |||| || | ||| |||||||| ||||| | |||||| Sbjct 122744 ACGCTATCGAGACCATTCCGTGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATGGATCG 122803 Query 1456154 ---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGG 1456209 ||||| || || || | | || || || || | |||||||| || || || Sbjct 122804 CGGACAAGAAG----TCACCATTCAGT-GATCGACTAGTAGCATTTGCCGCCGTTGAAGG 122858 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||| || || |||||||||||| | ||||| ||||| ||||| || || || ||||| Sbjct 122859 CATATTCTTTTCGGGCAGTTTCGCTTCGATCTTCTGGCTAAAGAAACGTGGTCTTATGCC 122918 Query 1456270 CGGTCTTCTGCTTTAGCAACGA 1456291 |||| || |||||||| || Sbjct 122919 AGGTC-TCACTTTTAGCAATGA 122939 >seq11 Length=1611644 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | ||||||||||| || || ||| || | | ||| | Sbjct 311114 ATCTACAAGGTTTTGAAGCAGGTGCATCCAGACAC---TGGA--ATTAGC-AGCAAAGCA 311167 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || |||||| ||||||||||| | |||| || |||| | ||||| | Sbjct 311168 ATGTCCATTATGAACAGCTTTGTCAACGATGTTTTCGATCGTATCGCAGCAGAGGCATCT 311227 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||| || ||| | || || | | |||||||| ||||| || ||| Sbjct 311228 CGTCTGGCGCACTACAATAATCGCCATACCATAAGTTCTCGCGAGATTCAGACTGCTGTG 311287 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||| | ||| |||||||| || |||||| ||| |||||| || Sbjct 311288 CGCCTGCTGTTGCCTGGCGAACTAAGCAAGCACGCAGTCAGCGAGGGGAC 311337 >seq16 Length=1253240 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | ||||||||||| || || ||| || | | ||| | Sbjct 513407 ATCTACAAGGTTTTGAAGCAGGTGCATCCAGACAC---TGGA--ATTAGC-AGCAAAGCA 513354 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || |||||| ||||||||||| | |||| || |||| | ||||| | Sbjct 513353 ATGTCCATTATGAACAGTTTTGTCAACGATGTTTTCGATCGTATCGCAGCAGAGGCATCT 513294 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||| || ||| | || || | | || ||||| ||||| || ||| Sbjct 513293 CGTCTGGCGCACTACAATAATCGCCATACCATAAGTTCTCGTGAGATTCAGACTGCTGTG 513234 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||| | ||| |||||||| || |||||| ||| |||||| || Sbjct 513233 CGCCTGCTGTTGCCTGGCGAACTAAGCAAGCACGCAGTCAGCGAGGGGAC 513184 >seq4 Length=2444288 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | ||||||||||| || || ||| || | | ||| | Sbjct 2033828 ATCTACAAGGTTTTGAAGCAGGTGCATCCAGACAC---TGGA--ATTAGC-AGCAAAGCA 2033881 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || |||||| ||||||||||| | |||| || |||| | ||||| | Sbjct 2033882 ATGTCCATTATGAACAGTTTTGTCAACGATGTTTTCGATCGTATCGCAGCAGAGGCATCT 2033941 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||| || ||| | || || | | || ||||| ||||| || ||| Sbjct 2033942 CGTCTGGCGCACTACAATAATCGCCATACCATAAGTTCTCGTGAGATTCAGACTGCTGTG 2034001 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||| | ||| |||||||| || |||||| ||| |||||| || Sbjct 2034002 CGCCTGCTGTTGCCTGGCGAACTAAGCAAGCACGCAGTCAGCGAGGGGAC 2034051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781685737572