Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 seq20 109 6e-19 >seq24 Length=829597 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || |||| |||||||||||| || || ||||||||||| ||||||||||| | Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | | |||||||| || || ||||| ||||||||||| || || | Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| |||||||| |||||| Sbjct 293071 GTTTTCACGAAAATCTGCATT 293051 Score = 102 bits (112), Expect = 8e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTA-TTT 294564 Query 134630 TTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 |||||| | || | |||| || || |||| ||||| ||||| || || ||||| || | Sbjct 294563 TTGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAG 294504 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | || |||||||| || ||||| Sbjct 294503 TGAGCGTCTTAACGAATATCTGCAT 294479 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| || || || ||||| ||||| |||||||| || || |||||||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 134631 TGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || | | |||| ||||| || | ||||| || || || || || || || || Sbjct 294845 GCTTTCAC-GTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGT 294787 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 |||||||| || |||||||||||| Sbjct 294786 CAAAGTTTTCACAAAAATTTGCATT 294762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || || || || | |||||||| || ||||| || || || || |||||||||| Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | ||| || || | ||||| |||| || || ||||| |||||||| || || | Sbjct 293998 TAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTG 293939 Query 134689 TTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| || |||||||||||| Sbjct 293938 TCAATGTTTTGACAAAAATTTGCATT 293913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||||||||||||||||||||| || || || || ||||| || || || || | Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || ||| | ||||| || | ||||| || || || || ||||| || || || Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || || || ||||||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || |||||||||| ||||| ||||| ||||||||||| || || |||||||| Sbjct 295190 TGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAATC 295131 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || || || || | || || |||| || || || | || || ||||| ||| Sbjct 295130 TTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCCG 295071 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || |||||||| Sbjct 295070 GTCAGTGTTTTCACAAAGATTTGCAT 295045 >seq20 Length=1136993 Score = 109 bits (120), Expect = 6e-19 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 21427 TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATA 21486 |||||||| ||| |||||| |||||||| || || ||||| || | || ||| |||| Sbjct 123317 TATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATTTCCATA 123258 Query 21487 AAATTAAAAGGATTGCTGGCGTAAAA--ACACCTTTCTTC-GTTCAATTCCACGCACAAA 21543 || | || ||||| || | || | | ||| | | || |||||| || | ||| Sbjct 123257 AAGTCGAACGGATT-CT--CAGAATTGTATATCTTGTTGCAGTCCAATTCAACCAATAAA 123201 Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 ||||| |||||| | || |||||| | ||||| |||||||||||||| | || | | Sbjct 123200 CGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGATCAAGTTG 123141 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 ||||| || |||||||| | |||||| | ||| || | ||||| || Sbjct 123140 ACCGGAAGTGCTTCGGTCAGAAACTCTTGCTCAATGACGACCGCCTC 123094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396466851120