Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20 116 3e-21 >seq20 Length=1136993 Score = 116 bits (128), Expect = 3e-21 Identities = 261/385 (68%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||| |||| | |||| || || || ||||| || || ||||| ||| Sbjct 122602 CGCTTTTCTCAGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATAGCC 122661 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 ||||| || ||||| ||||||||||| || || ||||| || |||||||| |||| | Sbjct 122662 ATAGAGAACATTCACTCGGAAATGTATAGCCTCCTGATTGACACGTACATTCAAGACG-- 122719 Query 44024 CACGAGAAGC---ATCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAA 44079 | | | ||| | || |||| || || || || | || | | |||| |||| | || Sbjct 122720 -AAGCGGAGCGTTACCGCCTGTTCAACGCTATCGAGACCATTCCGTGCG-TTAAGAAGAA 122777 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTGT 44136 || || ||||| || |||||| || | | | || | || ||||| || Sbjct 122778 GGCCGATTGGGCTCTACGATGGATCGCGGACAAGAAGTCACCATTCAGTGATCGACTAGT 122837 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||| | || |||||||| |||||||| || || || | || || ||| | Sbjct 122838 AGCATTTGCCGCCGTTGAAGGCATATTCTTTTCGGGCAGTTTCGCTTCGATCTTCTGGCT 122897 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||| ||| | ||||| || | || ||| |||||| | || || ||||| Sbjct 122898 AAAGAAACGTGGTCTTATGCCAGGTCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGA 122957 Query 44257 AG-GCT-TACATTGCGATTTTGCTT 44279 | || | |||||| | |||||| Sbjct 122958 GGTACTATTCATTGCTTTGTTGCTT 122982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454517737530