Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 3e-15 >seq24 Length=829597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 |||||||| |||| | || |||||||| ||||| | || || ||||| || ||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| | |||| | |||||| | || || ||||| || ||||| | ||||| ||| Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 | |||||||||||| |||||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCAT 294763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27102 TGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATC 27161 ||||||||||| |||| || ||||||||||| ||||| | ||||| ||||| ||| Sbjct 295190 TGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAATC 295131 Query 27162 TTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCC 27221 || | || | | | || | || |||| | || ||||| | || || | ||| || Sbjct 295130 TTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCCG 295071 Query 27222 GTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||||||||||||||||||||| Sbjct 295070 GTCAGTGTTTTCACAAAGATTTGCATA 295044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 ||||||| | || || ||||| ||||| || || | || || ||||| ||||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 | |||| | | || | ||||| | | |||||||| || ||||||| |||||| |||| Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| || ||||| Sbjct 293649 GCGTTTTCACAAATATCTGCAT 293628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932815260272