Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19 273 7e-68 seq24 138 3e-27 seq51 122 3e-22 seq20 89.7 2e-12 seq6 84.2 7e-11 >seq19 Length=1155537 Score = 273 bits (302), Expect = 7e-68 Identities = 885/1357 (65%), Gaps = 23/1357 (2%) Strand=Plus/Plus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||| | ||||| || |||||||| || || ||| |||| ||| | || ||| Sbjct 887306 CGCTGTTGGAATTGACTTAGGTACGACGTACAGTTGCGTTGGTGTGTTCCAGCATGGCAA 887365 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || ||||| || || || || || ||| | || |||||| || || || ||||| Sbjct 887366 GGTGGAGATAATAGCCAACGACCAGGGCAACCGCACCACGCCAAGCTATGTGGCTTTTAC 887425 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 || || ||| | |||| || ||| | || || || |||| || ||||| | || Sbjct 887426 GGACACGGAGAGACTGATCGGCGATGCCGCCAAGAACCAAGTCGCCTTGAATCCTCACAA 887485 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATC 349437 || ||||| || || |||||||| || || |||| | |||| || || || Sbjct 887486 CACCGTTTTCGACGCAAAGCGACTGATCGGGCGAAGATACGATGACGCTGCTGTGCAGTC 887545 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 ||| | || |||| ||||| | || || | ||||| | || |||| ||| | Sbjct 887546 TGACATGAAGCATTGGCCTTTCAAGGTGGTC---AGTGACGGAGGCAAGCCAAAGATTCA 887602 Query 349498 GGTTGAATATAAAGGTGA-ACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAATGGT 349554 ||| ||||| ||||| || || || | | ||||| ||||||| | | ||||| Sbjct 887603 GGTGGAATACAAAGGCGAGACCAAGA---TGTTTACTCCCGAAGAGGTCAGCGCTATGGT 887659 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || ||||||||||| || | || ||||| ||||| ||| |||| || | || || || Sbjct 887660 ATTGGTTAAAATGAAAGAGACGGCAGAAGCTTATTTGGGTAAAACCGTGAAGGACGCCGT 887719 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 ||| ||||| || ||||| || |||||| | ||| | ||||| ||||| || || | Sbjct 887720 TATCACTGTTCCGGCCTACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCAGGTAC 887779 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||| | || || ||||| || |||| || ||||| || || ||||| || || || || Sbjct 887780 CATTTCTGGATTGAATGTCCTTCGAATCATCAATGAGCCGACCGCTGCCGCTATCGCCTA 887839 Query 349735 TGGGCTTGATA--AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 |||| | || | ||| | | | || || || || || || || | || || Sbjct 887840 TGGGTTGGACAAGAAAGGTACGGGCGAGCGGAACGTA--CTGATCTTCGACCTGGGCGGC 887897 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || | || ||| | || || || || || ||||| || | || Sbjct 887898 GGTACCTTCGATGTGTCCATTCTGACAATCGAGGATGGTATATTCGAAGTGAAGTCTACG 887957 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || || ||||| |||||||| || || || ||||| ||||| | ||| | || ||||| Sbjct 887958 GCGGGCGATACTCATCTTGGCGGTGAGGACTTTGACAATCGCATGGTTACCCACTTTGTG 888017 Query 349913 AAAGAATTTAAGCGTCAAGCTAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCG 349971 || || ||||| || ||| | || || | | || |||||| | || ||||||| Sbjct 888018 GCCGAGTTCAAGCGCAAAAATAAGAAGGACATGTCGGGA-AATCCTCGTGCCTTGCGTCG 888076 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT-ATCATCTACTACCCAAACCTCTA 350030 | | || || || ||||| || ||| | | || | | || | || ||| | | Sbjct 888077 TTTGCGTACAGCTTGCGAACGAGCCAAGAGAACGTTGAGTAGCT-CCACTCAAGCGAGCA 888135 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 | |||||||| | | || |||| || | | | | || || ||||| || | Sbjct 888136 TAGAAATTGACAGTTTGTACGAGGGCATCGACTATTACACCACGATCACTCGTGCCCGTT 888195 Query 350091 TTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT-TA 350149 | ||||| | || ||| | || | | || ||||||| || | |||||| | | Sbjct 888196 TCGAAGAGCTTTGCGCCGATTTGTTCCGCTCCACTTTGGATCCAGTTG-AAAAGTCTCTT 888254 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 ||||| || || || ||| | | || || || || |||||||| || || Sbjct 888255 CGCGATGCCAAGCTGGATAAGTCACAGGTGCACGATGTTGTGTTGGTTGGTGGCTCGACT 888314 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT--TCTA 350267 |||||||| || |||||| |||| || || ||||| ||||| |||| | | | | Sbjct 888315 CGTATTCCGAAGGTTCAAAAGTTGCTGCAAGACTTTTTCAATGG-AAAGGAGTTGAACAA 888373 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 || | || ||||| ||||| || || || || || ||||| || ||||| |||| || | Sbjct 888374 GAGC-ATCAATCCGGATGAGGCCGTCGCTTACGGGGCTGCGGTACAGGCGGCTATCTTGT 888432 Query 350328 CTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | || ||||| | | | | || || || || | || || || || | || | Sbjct 888433 CAGGCGATAAGCATGAGGCAGTGCAAGACCTTTTGCTTTTGGACGTGACGCCGTTGTCTC 888492 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 |||| ||||||| | |||| || ||||| | | || | |||| ||| ||| Sbjct 888493 TTGGCATAGAAACCGCCGGTGGTGTTATGACAGCATTGATAAAGCGTAATACTACGATAC 888552 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || |||||| ||| |||| | | | || |||||||| | || || | Sbjct 888553 CAACGAAGGTTTCCCAAGTGTTTACTACTTATTCCGACAATCAGCCCGGAGTGCTGATCC 888612 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAA 350544 | || | ||||| || || || || |||||||| Sbjct 888613 AGGTGTACGAAGGCGAGCGAGCGATGACCAAAGATAA 888649 >seq24 Length=829597 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| ||||| |||||||| || ||||| ||||||||||| ||||||||| Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| |||||||| || || || |||||||| || |||| || ||||| || ||| Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || |||||||||||| Sbjct 293071 GTTTTCACGAAAATCTGCATT 293051 Score = 131 bits (144), Expect = 5e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || || |||||||| ||||| ||||||||||| || ||||||| Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || ||||| ||||| || |||| |||||| || || || Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 116 bits (128), Expect = 1e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| |||| ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| || || ||||| | || || || || ||||| || || | |||||| || || Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 | ||||| |||||||| |||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCATT 294762 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||||||||| || |||||||| ||||| || ||||| ||||| ||||| || | Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTC 293708 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || |||||||| | || || || |||||||| || || | || || ||||| || Sbjct 293707 TTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGC 293648 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 293647 GTTTTCACAAATATCTGCAT 293628 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||||||||||||||| ||||| ||||| || || ||| Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | || || || || |||||||| || | || || || || | | Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| || |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | ||||| |||||||| ||||| ||||| || ||||||||||| || Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || |||| | || || ||||| ||||| | ||| | || || ||||||| Sbjct 293412 TTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAAG 293353 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||||||||| Sbjct 293352 GTCTTGACGAAAATCTGCAT 293333 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| || | || ||||||||||| || || |||||||| || | Sbjct 295051 TTTGCATACCACCACGCAAACGAAGGACAAGATGAAGCGTGCTTTCCTTTTGAATGTTGT 294992 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTT 140596 | ||||| | |||||||||||| || |||||||| Sbjct 294991 AGTCAGACAGTGTTCGCCCATCCTCGAGTTGTTT 294958 >seq51 Length=261480 Score = 122 bits (134), Expect = 3e-22 Identities = 317/474 (67%), Gaps = 16/474 (3%) Strand=Plus/Minus Query 349248 AAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACG 349307 |||||| ||| || ||||| ||||| || || ||||| || | | || || ||||||| Sbjct 32938 AAAATGGTCGCGTTGAAATTATTGCCAACGACCAAGGCAATCGGATCACTCCGTCATACG 32879 Query 349308 TTGCATTTAC---CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTG 349364 | || || || |||| ||| ||| | || || ||| | || || ||||| | || | Sbjct 32878 TGGCGTTCACTCCCGAAGGTGAACGTCTAATAGGCGATGCGGCCAAGAATCA-GTTGACG 32820 Query 349365 -CTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC 349423 | ||||| ||||||| |||||||| || || ||| | || ||| | | |||||| Sbjct 32819 TCGAATCCCGAAAATACCGTTTTTGACGCCAAACGAATGATCGGTCGTGAATGGTCTGAC 32760 Query 349424 AAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT 349483 ||| | |||| | |||| ||| | || || | || || | || || Sbjct 32759 AAAAGTTTACAAGCCGATCGCAAAATGTGGCCATTCAAAGTGATTGAACAATCGGGC--- 32703 Query 349484 AAACCAATTATTGAGGTTGAA---TAT-AAAGGTGAACAAAAACAATTTTTACCCGAAGA 349539 ||||| ||||||| || || ||||| ||| ||| || || | ||||| || Sbjct 32702 AAACCGCACGTTGAGGT--AACCGTAGGAAAGGAGAA-AAAGACT-TTCTCGCCCGAGGA 32647 Query 349540 AATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAAC 349599 || || | ||||| || ||||||||||||| ||| || || ||| | || | | Sbjct 32646 GATATCGGCTATGGTGTTGACGAAAATGAAGGAAACTGCGGAGGCGTATCTTGGCAAGAA 32587 Query 349600 AGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAAC 349659 || || | ||||| |||| || || |||||||| ||||||||||| || ||||| Sbjct 32586 GGTCACACACGCTGTGGTTACGGTGCCTGCCTATTTCAATGATGCCCAACGACAGGCAAC 32527 Query 349660 AAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||| ||||| || | || || || ||| ||||| | || || || ||||| Sbjct 32526 AAAGGATGCAGGTACAATCGCTGGCCTAACCGTTCTTCGGATCATCAACGAACC 32473 >seq20 Length=1136993 Score = 89.7 bits (98), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 223414 ATACTCACCTACTCTTCTTTCaaaaaaaTTTGTTTTTCCTTCTATACTTATCATTTCCAT 223473 ||| || || || ||||||| || ||||| || || ||||| | |||||||||||| Sbjct 123318 ATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATTTCCAT 123259 Query 223474 AAAATCAAACGGATTACTAGAATTATAAATTTTATTATTTCCTAATTGAACTGCTAATCT 223533 ||| || |||||||| |||||| || || || || | |||| ||| ||| | Sbjct 123258 AAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTCCAATTCAACCAATAAACG 123199 Query 223534 ATCTGCTACAAATTCTATATATTGTGACATTAATTTACTATTCATACCTATTAAATTACA 223593 ||| || || | ||||| ||| | |||| | || | |||||| || || || || Sbjct 123198 ATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGATCAAGTTGAC 123139 Query 223594 CGGCAATGCTTCACAGATAAACTCTTTTTCTATTTCTACCGCATTTTTTATTAT 223647 ||| | |||||| | |||||||| || || | ||||| | | |||| || Sbjct 123138 CGGAAGTGCTTCGGTCAGAAACTCTTGCTCAATGACGACCGCCTCTCTTATGAT 123085 >seq6 Length=2290552 Score = 84.2 bits (92), Expect = 7e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 235880 TTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACC 235939 |||||||| ||| |||| |||| ||||||| ||||||||| ||||||||||||||| Sbjct 1862490 TTCAATAT--GGGCCAGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACT 1862433 Query 235940 GGGATCAAAACCCAGCATCTCCA 235962 |||||| | |||||||| |||| Sbjct 1862432 GGGATCGATACCCAGCAGGTCCA 1862410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248459255718