Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 5e-14 >seq5 Length=2343098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 ||||||| || ||||| | || | || || ||||| |||| |||||||| ||| Sbjct 1057155 AGACATATAACTTGATGTCAGAAAAATGGTTTACCCACGCCTCGCCTACCCTTTTTAACT 1057214 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 | || || ||| || ||| || || || || ||| | | ||||| | ||||||| Sbjct 1057215 CTGGAACTTGCAAACCACAGCTGAGTAGTTGCTTTCTACTCACAATGAAAGCGGACAGCA 1057274 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 ||||||| |||||||| |||||||| ||||||||| ||| || || Sbjct 1057275 TTGAGGGAATCTACGATACGCTCAAAGAGTGCGCGATCATTTCAAA 1057320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522701892640