Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 102 9e-17 seq5 93.3 5e-14 >seq3 Length=2787444 Score = 102 bits (112), Expect = 9e-17 Identities = 182/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | || ||| || | || || || || |||||||| |||||||| Sbjct 1007807 GTGAAAATGTATCTAGGGCTGGCCGAGTCTTTTCCGCCTTGCAGACGCGTGCCGAATTGA 1007748 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| || ||||| | |||||| || |||||||| || |||||||||||| Sbjct 1007747 CCAATGGGCAACAGCAGGTTAATATTGTTGCTTCCAACAAAGTTGTGCGCCAAGTTGACA 1007688 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| | | ||| | || ||||| ||||| | | | || || || | || Sbjct 1007687 ATCGTGGCCATCAAGCTGACTTCGCCATGATGATAGGAAGACATTTCGGCAACTGAACCA 1007628 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||||||||||| ||||| | || | | ||| ||||| ||||| | | || Sbjct 1007627 GCCAGCTGAGCAACCTTGACTTCGCGCTTGTCGTTTCGCTTGAAGCAGGTGAACAAAACT 1007568 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| || | ||||||| ||| || Sbjct 1007567 TTGCGTTGTCCCGGCTTCAAACCGTC 1007542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| | | || || ||||||||||| || ||| || || || || || Sbjct 2091524 GTGAAGATGTACCTCGCACTAGCGGCATCCTTGCCGCCCTGCAGACGAGTACCGAATTGG 2091583 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| |||||| |||||| || | ||||||||||| | | Sbjct 2091584 CCAACGGGCAGCAGTAAGTTGATATTGTTGCTGCCCACAAAGTCGTGAGCCAAATTTATA 2091643 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || ||| || || ||||| ||||| ||||| || | || || | | | || Sbjct 2091644 ATTGTTCCCATAAGGCTTGCTTCGCCGTGATGATATGCGGAAATTTCAGCAACGGAACCG 2091703 Query 152209 GCCAACTGCGCCACCTTCA 152227 |||||||| ||||| |||| Sbjct 2091704 GCCAACTGGGCCACTTTCA 2091722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 183/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | | || || ||||||||||| || ||||| ||||||||||| Sbjct 2091524 GTGAAGATGTACCTCGCACTAGCGGCATCCTTGCCGCCCTGCAGACGAGTACCGAATTGG 2091583 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| ||| || | ||| | |||||| ||||||||||| |||||||| || | | Sbjct 2091584 CCAACGGGCAGCAGTAAGTTGATATTGTTGCTGCCCACAAAGTCGTGAGCCAAATTTATA 2091643 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || ||||| || || || || ||||| || | || || ||| | || Sbjct 2091644 ATTGTTCCCATAAGGCTTGCTTCGCCGTGATGATATGCGGAAATTTCAGCAACGGAACCG 2091703 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 |||| ||| ||||| |||| ||| | |||| || ||||| ||| | | || | Sbjct 2091704 GCCAACTGGGCCACTTTCACTTCTCGCTTGTCA--TTACGCTTGAAGCAAGTGAACATAA 2091761 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| | |||| || || | |||||| Sbjct 2091762 CCTTTCTTTGACCAGGTTTTAAACCATC 2091789 Score = 93.3 bits (102), Expect = 5e-14 Identities = 280/427 (66%), Gaps = 8/427 (2%) Strand=Plus/Minus Query 151877 CGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACT 151936 |||||||||| ||||| || || ||||||| || | | |||| ||| || || | | Sbjct 1007959 CGGTACCGATCCCCTCGGCGCCATTGACCAAAACCGTGGGCAAAATGGGACAATACCATT 1007900 Query 151937 CCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGAT 151996 |||| || | | |||| || || | | || |||| | | | ||| || |||| Sbjct 1007899 CCGGTTCGATTTTTTGATTATCGTCAAAGAGATAGTTCAGACAAGCCTCGTCGGCTGGAT 1007840 Query 151997 CGAATAT--CCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 || | || ||| | | ||| | | | ||||| ||||||| | |||||||| Sbjct 1007839 TAAACAAAGCCCTCGTGACC--GGATTAAGCAGGGTGAAAATGTATCTAGGGCTGGCCGA 1007782 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 || || || ||| ||| ||||| || || || ||| |||| || ||||| | || Sbjct 1007781 GTCTTTTCCGCCTTGCAGACGCGTGCCGAATTGACCAATGGGCAACAGCAGGTTAATATT 1007722 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 |||| || || || || || ||||| || ||||||||| || || || |||| || Sbjct 1007721 GTTGCTTCCAACAAAGTTGTGCGCCAAGTTGACAATCGTGGCCATCAAGCTGACTTCGCC 1007662 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-CG 152233 || ||||| | | | || || | | || |||| ||| || ||||| | || || Sbjct 1007661 ATGATGATAGGAAGACATTTCGGCAACTGAACCAGCCAGCTGAGCAACCTTGACTTCGCG 1007602 Query 152234 -TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | ||| ||| ||||| |||| | | | || ||||| || || ||||||||| Sbjct 1007601 CTTGTC--GTTTCGCTTGAAGCAGGTGAACAAAACTTTGCGTTGTCCCGGCTTCAAACCG 1007544 Query 152293 TCCACCA 152299 || |||| Sbjct 1007543 TCAACCA 1007537 >seq5 Length=2343098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||| || || || |||||||| ||||| || ||||| ||| |||||||| Sbjct 1062498 CGCAACTCGTTGCTTGTTGCTCCTATGCCAACTGCGTCCACAGCTCAAATCTTGGGCAAC 1062557 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||||||||| |||| |||| ||| |||| ||||| Sbjct 1062558 AACGAGGCGATCGAAGCGTATACGTCCAATCTCTAC 1062593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213906898800