Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 seq5 91.5 2e-13 seq20 82.4 9e-11 >seq24 Length=829597 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||||||||| | || ||||| ||||| || ||||| || ||| | Sbjct 295613 AATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTC 295672 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || |||| || || || |||||||| |||||||||||||| || || Sbjct 295673 GGACACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCA 295732 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||| | ||||||||||||| Sbjct 295733 GCAGCGTTTGATTTTTGCTGGTA 295755 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || | || |||||||| ||||| || || || ||| | Sbjct 293913 AATGCAAATTTTTGTCAAAACATTGACAGGCAAGACCATTACCCTCGAAGTAGAGCCGTC 293972 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | || |||||||||| ||||||||||| ||||| || ||||| Sbjct 293973 GGACACCATTGAGAATGTTAAAACTAAAATTCAAGACAAGGAGGGTATTCCGCCGGACCA 294032 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 |||||| || || || || ||||| Sbjct 294033 GCAGCGGCTTATCTTCGCCGGTAA 294056 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || ||||| || || ||||||||||| || || || ||| | Sbjct 295331 AATGCAAATATTCGTGAAAACGCTGACAGGGAAGACTATTACGCTGGAAGTGGAGCCTTC 295390 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | ||||| || || || ||||| ||||| || || || || || Sbjct 295391 GGATACCATAGAAAACGTAAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCGGATCA 295450 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||| |||||||||| ||| ||| Sbjct 295451 GCAGCGATTAATTTTTGCCGGTGAGC 295476 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || |||||||| || || || || || ||| | Sbjct 294762 AATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTC 294821 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| |||| || ||||||||||| ||||| || ||||| ||||| || Sbjct 294822 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGCATTCCGCCAGATCA 294881 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||| |||||| Sbjct 294882 ACAACGCTTAATTTTTGCCGGTAAG 294906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| || || || || || || || || || ||| | Sbjct 294479 ATGCAGATATTCGTTAAGACGCTCACTGGGAAAACAATCACCCTCGAAGTGGAGCCGTCA 294538 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || | ||||| |||||||| ||||| ||||| ||||| ||| Sbjct 294539 GATACTATTGAAAACGTTAAAACAAAAATACAGGACAAAGAGGGCATTCCGCCAGATCAG 294598 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| |||| ||||||||||| Sbjct 294599 CAGCGCTTAATATTTGCTGGTAA 294621 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || || || || ||||| || || |||||| | Sbjct 293051 AATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTC 293110 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || |||| |||| ||||| ||||||||| || || || || ||||| || || || Sbjct 293111 CGACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCA 293170 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||| || || || ||| || Sbjct 293171 GCAGCGTCTGATCTTCGCAGGTTAG 293195 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || ||||| || || || || | || || ||| | Sbjct 295045 ATGCAAATCTTTGTGAAAACACTGACCGGAAAAACAATCACGTTGGAAGTCGAGCCGTCA 295104 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||| || |||||||| || || || || || Sbjct 295105 GATACGATCGAGAACGTAAAGACGAAGATTCAAGATAAGGAGGGCATACCGCCTGATCAA 295164 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||| || |||||||| ||||| |||| Sbjct 295165 CAGCGCCTGATTTTTGCCGGTAAACAAC 295192 >seq5 Length=2343098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCA-AGTGTGGGGTTCTCCATG 80127 |||| ||||| ||||| | ||||||||| | || || || ||| | || | ||||| Sbjct 1062957 CCTTTTTCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGT-TCGGATGAGCCATG 1062899 Query 80128 AAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATA 80187 | ||||| || || || |||||| ||||| || |||||||| || ||||| || || Sbjct 1062898 TATATGTTAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATG 1062839 Query 80188 ATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||| ||| || ||||||||||| ||||| Sbjct 1062838 ATTACCTTCTGCGGAATTTCCCAAACTGT 1062810 >seq20 Length=1136993 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/227 (68%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 64627 CTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGG 64686 ||||||| ||||| ||||| | || |||| || ||||| || ||||| | || Sbjct 122737 CTGTTCAACGCTATCGAGACCATTCCGTGCGTTAAGAAGAAGGCCGATTGGGCTCTACGA 122796 Query 64687 TGGATGAATCGTGG-------GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGT 64739 ||||| || || ||| | || || | || || | ||| |||||| || Sbjct 122797 TGGAT----CGCGGACAAGAAGTCACCATTCAGTGATCGACTAGTAGCATTTGCCGCCGT 122852 Query 64740 GGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCT 64799 ||||| || |||||||| || ||| ||| || ||||||||||| || || || || Sbjct 122853 TGAAGGCATATTCTTTTCGGGCAGTTTCGCTTCGATCTTCTGGCTAAAGAAACGTGGTCT 122912 Query 64800 GATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||||| | ||| || ||||| ||||| || || |||| Sbjct 122913 TATGCCAGGTCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 122959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308218562720