Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq24 91.5 9e-14 >seq24 Length=829597 Score = 91.5 bits (100), Expect = 9e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||||||||| |||| ||||| || || || || | || ||||| ||| |||||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTT- 293711 Query 34625 GTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 || || ||| || ||| ||||| ||| ||||||| ||||| ||||| ||||| Sbjct 293710 GTCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTC 293651 Query 34684 AACGTTTTCACAAAAATCTGCATG 34707 | |||||||||||| ||||||||| Sbjct 293650 AGCGTTTTCACAAATATCTGCATG 293627 Score = 91.5 bits (100), Expect = 9e-14 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCT 34621 |||||| ||||||||||| ||||| || || ||||| | ||||| |||| |||| || | Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGT-AT-T 294565 Query 34622 TTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 |||||||||||| | ||| || ||| ||||||||| | ||| || ||||| || Sbjct 294564 TTTGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCA 294505 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || |||||||| Sbjct 294504 GTGAGCGTCTTAACGAATATCTGCAT 294479 Score = 91.5 bits (100), Expect = 9e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| ||||| || ||||| || ||||| | || ||||| || ||| ||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCC-TGAATTTT 294847 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| ||| | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 294846 GGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGT 294787 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || |||||||||||||| ||||| Sbjct 294786 CAAAGTTTTCACAAAAATTTGCAT 294763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621 |||||||||| || || | ||||| ||||||||||| | |||||||||||| ||| | Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCT-TGAATT 294000 Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 || |||||||| | ||| ||||| ||| ||||| | ||| || || || || Sbjct 293999 TTAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCT 293940 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| |||||||| ||||| Sbjct 293939 GTCAATGTTTTGACAAAAATTTGCAT 293914 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||| Sbjct 293912 CCGCCTCTCAACCGCAAAACCAAATGGAGCGTGCTTTCCTTTTGTATGTTGTAATCGGAA 293853 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568 || || || | ||||| | |||||| || Sbjct 293852 AGAGTCCGTCCATCTTCCAATTGTTTGCC 293824 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 |||||||||||||||| || | |||||||| || ||||| | |||||||| ||| ||| Sbjct 295192 GTTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCT-TGA 295134 Query 34619 TCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || || ||| | || || ||| ||| ||||||| || || ||||| Sbjct 295133 ATCTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTT 295074 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||||||||||| || ||||| Sbjct 295073 CCGGTCAGTGTTTTCACAAAGATTTGCAT 295045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728426255298