Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq24 118 9e-22 >seq24 Length=829597 Score = 118 bits (130), Expect = 9e-22 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || |||||| | ||||| || |||||||||||||| Sbjct 294197 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATTACGCTGGAAGTGGAACCGTCG 294256 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| ||||| |||||||| || || || |||||| Sbjct 294257 GATACTATTGAGAATGTGAAGACTAAAATACAAGATAAAGAAGGTATTCCGCCTGATCAA 294316 Query 27108 CAGCG 27112 ||||| Sbjct 294317 CAGCG 294321 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || ||||| || || || || | ||||| || ||||| || ||| Sbjct 293049 GCAATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCG 293108 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||||||||||| | || || | ||||||||||| ||||||||||| || || ||| Sbjct 293109 TCCGACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGAT 293168 Query 27105 CAACAGCGTTTAATATACGCCGG 27127 || |||||| | || | ||| || Sbjct 293169 CAGCAGCGTCTGATCTTCGCAGG 293191 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| ||||||||||| |||| || || ||||| || ||||| Sbjct 293627 CATGCAGATATTTGTGAAAACGCTGACCGGCAAAACTATAACGCTGGAAGTTGAGCCGTC 293686 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || ||| |||||||| || ||||| || || || ||||| Sbjct 293687 CGACACCATTGATAACGTGAAGACAAAGATTCAAGATAAGGAAGGGATCCCTCCAGATCA 293746 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||| |||| | ||||| Sbjct 293747 GCAGCGACTAATCTTTGCCGG 293767 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | ||||| || ||||| || ||||| Sbjct 293914 ATGCAAATTTTTGTCAAAACATTGACAGGCAAGACCATTACCCTCGAAGTAGAGCCGTCG 293973 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||||||||| || || || || || || || Sbjct 293974 GACACCATTGAGAATGTTAAAACTAAAATTCAAGACAAGGAGGGTATTCCGCCGGACCAG 294033 Query 27108 CAGCGTTTAATATACGCCGGCAAAC 27132 ||||| | || | |||||| |||| Sbjct 294034 CAGCGGCTTATCTTCGCCGGTAAAC 294058 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || | |||||||| | || || | ||||||||||| Sbjct 293329 CGGCATGCAGATTTTCGTCAAGACCTTAACCGGCAAAACGATAACATTAGAAGTGGAACC 293388 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | |||||| || || ||||||||| ||||| |||||||| || || || Sbjct 293389 CTCGGACACTGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 293448 Query 27104 TCAACAGCGTTTAATATACGCCGG 27127 |||||| || || || | |||||| Sbjct 293449 TCAACAACGGTTGATCTTCGCCGG 293472 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || || || | || || || |||||||| ||||| Sbjct 294479 ATGCAGATATTCGTTAAGACGCTCACTGGGAAAACAATCACCCTCGAAGTGGAGCCGTCA 294538 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||| || |||||||| ||||| || || ||||| Sbjct 294539 GATACTATTGAAAACGTTAAAACAAAAATACAGGACAAAGAGGGCATTCCGCCAGATCAG 294598 Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131 ||||| ||||||| || || ||| Sbjct 294599 CAGCGCTTAATATTTGCTGGTAAA 294622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||||||| || | || || | ||||| || ||||| Sbjct 295045 ATGCAAATCTTTGTGAAAACACTGACCGGAAAAACAATCACGTTGGAAGTCGAGCCGTCA 295104 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || |||||||| || || |||||||| || |||||| Sbjct 295105 GATACGATCGAGAACGTAAAGACGAAGATTCAAGATAAGGAGGGCATACCGCCTGATCAA 295164 Query 27108 CAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| | || | ||||| |||||| Sbjct 295165 CAGCGCCTGATTTTTGCCGGTAAACAA 295191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || ||||| ||||| || ||| ||||||| || |||||||| || || Sbjct 295332 ATGCAAATATTCGTGAAAACGCTGACAGGGAAGACTATTACGCTGGAAGTGGAGCCTTCG 295391 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || ||||||||||| || || ||||| ||||| Sbjct 295392 GATACCATAGAAAACGTAAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCGGATCAG 295451 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| ||||| | ||||| Sbjct 295452 CAGCGATTAATTTTTGCCGG 295471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| ||||| |||| || ||||||||||| || || Sbjct 295614 ATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTCG 295673 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || |||||||| || || || || ||||| Sbjct 295674 GACACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCAG 295733 Query 27108 CAGCGTTTAAT 27118 |||||||| || Sbjct 295734 CAGCGTTTGAT 295744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916736437120