Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq24 91.5 3e-13 >seq24 Length=829597 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || | ||||||||| || || |||| |||||||| ||||| || || Sbjct 294906 CTTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTT 294847 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||||||| || ||||| ||| || || || || || || ||||| || || Sbjct 294846 GGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGT 294787 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||| || ||||| | |||||| Sbjct 294786 CAAAGTTTTCACAAAAATTTGCATT 294762 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || || || || || || |||| ||||| || || || || || | Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || | ||| || ||||| ||||| || || || ||||||||||| Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 293071 GTTTTCACGAAAATCTGCATT 293051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | |||||||| ||||| |||| |||||||||||||| || ||| Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || | ||||| ||| ||| || || | || ||||| || || || | Sbjct 293412 TTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAAG 293353 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 293352 GTCTTGACGAAAATCTGCAT 293333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147455399690