Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq24 114 9e-21 >seq24 Length=829597 Score = 114 bits (126), Expect = 9e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| || ||||| ||||| |||||||| || | | Sbjct 294479 ATGCAGATATTCGTTAAGACGCTCACTGGGAAAACAATCACCCTCGAAGTGGAGCCGTCA 294538 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||||||||||| | |||||||| || | ||||||||||| Sbjct 294539 GATACTATTGAAAACGTTAAAACAAAAA-TACAGGACAAAGAGGGCATTCCGCCAGATCA 294597 Query 23730 ACAGCGTTTAATATTTGCCGGCAAA 23754 ||||| ||||||||||| || ||| Sbjct 294598 GCAGCGCTTAATATTTGCTGGTAAA 294622 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| |||||||||||||| || || ||||||||||| | | Sbjct 293051 AATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTC 293110 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||||| | || | |||||| || |||||||| | || || ||||| Sbjct 293111 CGACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCA 293170 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 |||||| | || || || || Sbjct 293171 GCAGCGTCTGATCTTCGCAGG 293191 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || |||||||| || | ||||| || || || Sbjct 293333 ATGCAGATTTTCGTCAAGACCTTAACCGGCAAAACGATAACATTAGAAGTGGAACCCTCG 293392 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||||||||| | |||| ||||||| ||||| ||||| | || || |||||| Sbjct 293393 GACACTGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATTCCCCCTGATCAA 293452 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || || || || || ||||| Sbjct 293453 CAACGGTTGATCTTCGCCGG 293472 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| | || || || || || || || ||||| || || | Sbjct 294762 AATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTC 294821 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||||| | ||| |||||| || || ||||| | ||||||||||| Sbjct 294822 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGCATTCCGCCAGATCA 294881 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||| || ||||| |||||||| || Sbjct 294882 ACAACGCTTAATTTTTGCCGGTAA 294905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008339435448