Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq24 98.7 2e-15 seq15 86.0 1e-11 >seq24 Length=829597 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || || ||||| ||||||||||| ||||||||||| || || Sbjct 294056 TTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTTTA 293997 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| || |||||||| || | || || || | || || |||||||| ||| Sbjct 293996 GTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTGTC 293937 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 || ||||| | || | ||||||| Sbjct 293936 AATGTTTTGACAAAAATTTGCATT 293913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || || | |||||||| || |||||||| |||||||| || || || || Sbjct 294906 CTTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAAT-TT 294848 Query 225630 TTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | |||| ||| ||| || ||||| |||| ||||| || | ||| || |||||||| | Sbjct 294847 TGGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAG 294788 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||| | || | ||||||| Sbjct 294787 TCAAAGTTTTCACAAAAATTTGCATT 294762 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||||||||| ||||| || |||||||||||||| || ||||| || || | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || || || || || | |||||| || | ||| || |||||||| || | | Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 225694 GTTTT 225698 ||||| Sbjct 294216 GTTTT 294212 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | |||||||| || || ||||| ||||||||||| || || ||| | Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || | ||||| |||| |||||| ||||| || ||||| ||||| || || Sbjct 293412 TTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAAG 293353 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 293352 GTCTTGACGAAAATCTGCAT 293333 >seq15 Length=1428023 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||||||||| || |||||||||||| || || || |||||||| || || Sbjct 1060483 AAGATTTGACCATCAGTTATGCTGATAACATTTGTTGGAATGTACGCAGAAACGTCTCCG 1060424 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTTCAC 4590 || ||||| || | || || | ||||| || || ||||| ||||| || | |||| || Sbjct 1060423 GCCTGTGTCTCTATCACTGGCAGTGCTGTCAGAGAACCACCTCCAAACTTATCATTTAAC 1060364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526524532364