Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq20 156 4e-33 seq22 123 2e-23 >seq20 Length=1136993 Score = 156 bits (172), Expect = 4e-33 Identities = 235/331 (71%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| | || || ||||| || || | || || || ||||||||| Sbjct 122921 CCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAAT 122862 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT--TGTCTT 4725 |||||||| ||||||||||| ||||||| ||| | ||| | || ||| |||| Sbjct 122861 ATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCACTGAATGG--TGACTTCTTGTCCG 122804 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| || ||||| | || || ||||||||||||||||| || | ||||||| Sbjct 122803 CGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGT 122744 Query 4786 TAAATAAT---TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || | | || | | | ||||||||| || ||||| || || ||||||| Sbjct 122743 TGAACAGGCGGTAACGCTCCGC---TTCGTCTTGAATGTACGTGTCAATCAGGAGGCTAT 122687 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||| || || || || ||||| || || || || ||||||||||| | ||| |||| Sbjct 122686 ACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGAGCCTCTG 122627 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 | || |||| ||| | | |||| | ||| || Sbjct 122626 TCACCTGAATTTCCTGAGAAAAGCGTTCAAC 122596 >seq22 Length=1093107 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31778 ACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGA 31837 || || |||||| || | ||||| || ||||||||||| | || || | || || Sbjct 787296 ACTGACATTCAAGTTGCCATACCTGAGGGTTGCTACGGACGTGTTGCCCCGCGTTCAGGC 787355 Query 31838 TTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGA 31897 | |||||||| |||| ||||||||||| || || || || || |||||| ||||| Sbjct 787356 CTTGCAGTTAAGCACTGCATCGACGTGGGAGCCGGCGTGATCGACGGAGACTACAGAGGC 787415 Query 31898 AACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGGCGAT 31957 || |||||| | || |||| ||||||||| || | | ||| || | | ||||||| Sbjct 787416 AATGTTGGAGTAGTACTGTTCAATTTTGGAAAAGAGAAGTTCAGCGTACACAGGGGCGAT 787475 Query 31958 AGGGTAGCTCAACTAATTTGCGAAAAAATAG 31988 | |||||||||| || ||||||||||||| Sbjct 787476 CGCATAGCTCAACTTATCTGCGAAAAAATAG 787506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048007371898