Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20 161 1e-34 seq5 87.8 2e-12 >seq20 Length=1136993 Score = 161 bits (178), Expect = 1e-34 Identities = 243/340 (71%), Gaps = 9/340 (3%) Strand=Plus/Minus Query 48191 AAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCC 48250 ||| |||||||| ||||| || |||||||| || ||||| || || | |||||| || Sbjct 122931 AAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCC 122872 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTT 48309 ||||||||||||||||| ||||| |||||||| |||| || | | | || ||| Sbjct 122871 CGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCACTGAATGGTGACTT 122812 Query 48310 CGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | |||| ||||| ||| | |||||||| ||||||||||| || || || || || | Sbjct 122811 C-TTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCT 122753 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATTAA 48424 | ||||| || || || || || ||| |||| || ||| || || || | Sbjct 122752 CGATAGCGTTGAACAGGCGGTAACGCTC--CGCTTCGTCTTGAATGTACGTGTCAATCAG 122695 Query 48425 AAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCT 48484 || ||||||||||| |||||||| || || || || || || || |||||||| || | Sbjct 122694 GAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCG 122635 Query 48485 CGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCC 48524 || ||||| | ||| | ||| | |||| |||||| || Sbjct 122634 AGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTCAACC 122595 Score = 102 bits (112), Expect = 1e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| ||||| | | ||||| ||||| || || ||||| | ||||| || Sbjct 123323 TTTTGATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATT 123264 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 |||||||| || || ||||| | | ||| || || || || | | ||||| || | Sbjct 123263 TCCATAAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTCCAATTC---AACC 123207 Query 47970 AGT---CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | | | ||| || ||| | ||||| |||| ||||| ||| |||||||| || || Sbjct 123206 AATAAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGATC 123147 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGAT 48067 | || || || || || || || ||||||||||| || || Sbjct 123146 AAGTTGACCGGAAGTGCTTCGGTCAGAAACTCTTGCTCAAT 123106 >seq5 Length=2343098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 77288 CCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACT 77347 ||||||||| ||||| | ||| ||| |||| | ||| || || | || || ||||| Sbjct 1062410 CCAATCCCAGAGATCGGTAGGCGTAACGCCCCACATATCATACTGCAATATCCCTTTACT 1062351 Query 77348 AGCATATGATCCATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACT 77404 |||||| || || || | || || || ||| || || || || || || Sbjct 1062350 GATCGGTGATCCTTTGTACGTGGCGTAGGGCCCAAAATCTTTT---GCCAGCTCGCAGCT 1062294 Query 77405 CGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC 77464 || ||||| || ||| ||||| ||||| || || | ||| || | ||||| Sbjct 1062293 CGTTTCCAGCGCAGCGTGGTAAATGGTTTCAAAGATTTGGCGATTTAGCTTAAACGCTTC 1062234 Query 77465 AATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAAT 77524 | || || |||||| | | | |||||| |||||||| | |||||| |||||||| Sbjct 1062233 GGCAGATTCGAAGGGATAACGCATTAAAATAAAAGCATCTGCAAGTCCCTGCACTCCAAT 1062174 Query 77525 ACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 ||| ||||| | ||| | | |||| || ||| | || ||| || |||| |||| || Sbjct 1062173 ACCTATAGGACGATGACGCATATTCGATATTCTCGC--CTGCAAAAGGAAAATACTT 1062119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666142891840