Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq20 102 1e-16 seq5 91.5 2e-13 >seq20 Length=1136993 Score = 102 bits (112), Expect = 1e-16 Identities = 216/317 (68%), Gaps = 18/317 (6%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCT--CGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||||| ||||| || ||| ||||| |||| ||||| || || ||||| | ||||| Sbjct 123323 TTTTGATATTCGCC--CACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCA 123266 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 |||||||||| || |||||||| | ||| || || || || | | ||||| || Sbjct 123265 TTTCCATAAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTCCAATTC---AA 123209 Query 46457 TCAGT---CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTA 46513 || | | ||| || ||| | ||||| || ||||| ||| |||||||| || | Sbjct 123208 CCAATAAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGA 123149 Query 46514 TGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA 46573 | | |||||||| || || || || ||||||||||| ||||| ||| || || | Sbjct 123148 TCAAGTTGACCGGAAGTGCTTCGGTCAGAAACTCTTGCTCAATGACGACCGCCTC---TC 123092 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGG----ATGCATCAAATGTTTAAACATTAAA 46629 |||| ||| | | | | | |||| ||| ||| |||| || ||||| | | Sbjct 123091 TTAT-GATCTGCTCGATGCGTTCCTTGCTGGTCTTGTGCTTCAAGTGAGAAAACAGCAGA 123033 Query 46630 CATGCAAAATCACAATG 46646 || ||||||||||| || Sbjct 123032 CAAGCAAAATCACAGTG 123016 >seq5 Length=2343098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 ||||||||| ||||| | || ||| |||| | ||| || || | || || || || Sbjct 1062410 CCAATCCCAGAGATCGGTAGGCGTAACGCCCCACATATCATACTGCAATATCCCTTTACT 1062351 Query 75943 AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC 76002 |||||| || || || |||| | ||| | || || || ||||| |||| Sbjct 1062350 GATCGGTGATCCTTTGTACGTGGCGTAGGGCCCAAAATCTTTTGCCAGCTCGCAGCTCGT 1062291 Query 76003 CTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAG 76062 || | |||| ||| ||||| ||||| || || | ||| || | |||||| Sbjct 1062290 TTCCAGCGCAGCGTGGTAAATGGTTTCAAAGATTTGGCGATTTAGCTTAAACGCTTCGGC 1062231 Query 76063 ACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | || || |||||| | | | |||||| |||||||| |||||||| ||||||||||| Sbjct 1062230 AGATTCGAAGGGATAACGCATTAAAATAAAAGCATCTGCAAGTCCCTGCACTCCAATACC 1062171 Query 76123 AATAGGTCTATGTCTCTTATTGGAAATT 76150 ||||| | ||| | | |||| || ||| Sbjct 1062170 TATAGGACGATGACGCATATTCGATATT 1062143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931673025920