Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq24 114 3e-20 seq3 100 6e-16 >seq24 Length=829597 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||||||| || || ||| ||||| ||||| ||||| || ||||| ||| Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | |||||||||||||| | || ||||| || || || || || || ||||| Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || ||||| |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| || || |||||||| || |||||| || ||||| || || || || Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | || ||||||||||| | || ||||| || || || ||||| || ||| Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 ||||| || || || || |||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCATT 294762 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 |||| ||||| ||||| | || || ||||| ||||||||||||||||||||| || | Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 | | ||| || | || || |||||||| | || |||||||| || || ||||| || | Sbjct 293998 TAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTG 293939 Query 283075 TCAAAGTCTTAACGAATATCTGCATT 283100 |||| || || || || || |||||| Sbjct 293938 TCAATGTTTTGACAAAAATTTGCATT 293913 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || || || || || || || |||||||| |||||||||||||| || Sbjct 295471 CCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCTTCGCC 295412 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 |||||| | || || || ||||||| || ||||| || || || ||||| || |||| Sbjct 295411 TTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTGTCAGC 295352 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || |||||||| |||||| Sbjct 295351 GTTTTCACGAATATTTGCATT 295331 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| || || || || || || |||||| ||||| ||||| || || || Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||| ||| | || ||||| || || | || |||||||| ||||| || || || || Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | |||||||||||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | || ||||| ||| ||||||||| || || ||||| || || | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || ||||| ||||| | ||| ||||| || || || ||||| || || | | Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| ||||| || ||||| | ||||||||| ||||| ||||||||||||| Sbjct 295044 ACCACCACGCAAACGAAGGACAAGATGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCAGA 294985 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 || || || |||||||| |||||||| || Sbjct 294984 CAGTGTTCGCCCATCCTCGAGTTGTTTACC 294955 >seq3 Length=2787444 Score = 100 bits (110), Expect = 6e-16 Identities = 315/484 (65%), Gaps = 8/484 (2%) Strand=Plus/Minus Query 273590 ATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACC 273649 |||| ||| ||| || | || || || || ||||| |||| || || || | || Sbjct 1007997 ATCTCGAGGATTGAAATTGGGCACCTTTGTCGACCACGCGGTACCGATCCCCTCGGCGCC 1007938 Query 273650 ATTCACCAGAATACTCGGGATAATTGGGACA-TAATATTCGGGCTCAATTTTATCACCAT 273708 ||| |||| || | || | ||| |||||| || |||| || || ||||| | | || Sbjct 1007937 ATTGACCAAAACCGTGGGCAAAAT-GGGACAATACCATTCCGGTTCGATTTTTTGATTAT 1007879 Query 273709 CGTCGTAAAGGTACTTCAACAAAGCATCATCCGT---ATCAACGAAAACCTTTCGCGTCT 273765 |||| | || || |||| |||| || || | || || ||| || | ||| Sbjct 1007878 CGTCAAAGAGATAGTTCAGACAAGCCTCGTCGGCTGGATTAAACAAAGCCCT---CGTGA 1007822 Query 273766 GAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCC 273825 ||||| || ||||||||||| || | || || ||| || || |||||||| | Sbjct 1007821 CCGGATTAAGCAGGGTGAAAATGTATCTAGGGCTGGCCGAGTCTTTTCCGCCTTGCAGAC 1007762 Query 273826 TCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCT 273885 || || || ||||| ||||| ||| ||| || |||||||| || || | | | Sbjct 1007761 GCGTGCCGAATTGACCAATGGGCAACAGCAGGTTAATATTGTTGCTTCCAACAAAGTTGT 1007702 Query 273886 GAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTT 273945 | |||| || || || || || | | || ||||| || ||||||| || Sbjct 1007701 GCGCCAAGTTGACAATCGTGGCCATCAAGCTGACTTCGCCATGATGATAGGAAGACATTT 1007642 Query 273946 CGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATG 274005 |||| | ||||| | |||||||||||| || |||| | | |||||||||||| Sbjct 1007641 CGGCAACTGAACCAGCCAGCTGAGCAACCTTGACTTCGCGCTTGTCGTTTCGCTTGAAGC 1007582 Query 274006 CGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGC 274065 || |||| || || || || ||||| || || ||||| | ||||| || || | Sbjct 1007581 AGGTGAACAAAACTTTGCGTTGTCCCGGCTTCAAACCGTCAACCAAAGATGGTATGCTTC 1007522 Query 274066 GTTC 274069 ||| Sbjct 1007521 TTTC 1007518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735096128124