Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq24 113 1e-19 >seq24 Length=829597 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | ||||| || || || |||||||| || || || ||| Sbjct 293917 CAAATTTTTGTCAAAACATTGACAGGCAAGACCATTACCCTCGAAGTAGAGCCGTCGGAC 293976 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| ||||| || || || || ||||||||||| Sbjct 293977 ACCATTGAGAATGTTAAAACTAAAATTCAAGACAAGGAGGGTATTCCGCCGGACCAGCAG 294036 Query 178044 CGACTTATCTTCGCCGGAAAAC 178065 || |||||||||||||| |||| Sbjct 294037 CGGCTTATCTTCGCCGGTAAAC 294058 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| |||||||| || || ||||| || || || ||| Sbjct 293055 CAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTCCGAC 293114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || | || ||||| || |||||||| || || ||||| ||||| Sbjct 293115 TCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCAGCAG 293174 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 293175 CGTCTGATCTTCGCAGG 293191 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || |||||||| || | || |||||| ||| ||| Sbjct 293336 CAGATTTTCGTCAAGACCTTAACCGGCAAAACGATAACATTAGAAGTGGAACCCTCGGAC 293395 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | |||||||| || ||| ||||||||||| ||||| || || || || || ||| Sbjct 293396 ACTGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATTCCCCCTGATCAACAA 293455 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 293456 CGGTTGATCTTCGCCGG 293472 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || ||||| || || || || || || ||||| || || Sbjct 295335 CAAATATTCGTGAAAACGCTGACAGGGAAGACTATTACGCTGGAAGTGGAGCCTTCGGAT 295394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || |||||||| || ||||| ||||| ||||| Sbjct 295395 ACCATAGAAAACGTAAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCGGATCAGCAG 295454 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || ||||| Sbjct 295455 CGATTAATTTTTGCCGG 295471 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | ||||| ||||| || ||||| || ||||| ||| ||| Sbjct 295617 CAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTCGGAC 295676 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||| ||||||||||| ||||| ||||| || ||||| Sbjct 295677 ACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCAGCAG 295736 Query 178044 CG 178045 || Sbjct 295737 CG 295738 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| ||||||||||| ||||| ||||| Sbjct 294482 CAGATATTCGTTAAGACGCTCACTGGGAAAACAATCACCCTCGAAGTGGAGCCGTCAGAT 294541 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||| || ||||||||||| || || || || || ||||| Sbjct 294542 ACTATTGAAAACGTTAAAACAAAAATACAGGACAAAGAGGGCATTCCGCCAGATCAGCAG 294601 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 || | || || || || ||| Sbjct 294602 CGCTTAATATTTGCTGGTAAA 294622 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || |||||||| ||||| | || || || ||||| Sbjct 295048 CAAATCTTTGTGAAAACACTGACCGGAAAAACAATCACGTTGGAAGTCGAGCCGTCAGAT 295107 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||| || || || || || || || || || || Sbjct 295108 ACGATCGAGAACGTAAAGACGAAGATTCAAGATAAGGAGGGCATACCGCCTGATCAACAG 295167 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || || || || ||||| ||||| Sbjct 295168 CGCCTGATTTTTGCCGGTAAACA 295190 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||||| || || || || || || || || |||||| || || Sbjct 294200 CAGATATTTGTGAAAACTCTTACTGGCAAGACAATTACGCTGGAAGTGGAACCGTCGGAT 294259 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||| || || || ||| || || || |||||||| || || || || || || Sbjct 294260 ACTATTGAGAATGTGAAGACTAAA-ATACAAGATAAAGAAGGTATTCCGCCTGATCAACA 294318 Query 178043 ACGACTTATCTTCGCCGG 178060 ||||||||||| ||||| Sbjct 294319 GCGACTTATCTTTGCCGG 294336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726480621364