Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 2e-12 >seq24 Length=829597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 |||||||| |||| || ||||| || | ||||| || ||||||||| ||| ||||||| Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCC-TGAATTTTTGC 293414 Query 41783 TTCAACGACGACA-CAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | ||| || ||||||| | ||||| || | ||||||||||| || || | Sbjct 293413 CTTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAA 293354 Query 41842 CGTCTTTACGAAAATCTGCATG 41863 ||||| ||||||||||||||| Sbjct 293353 GGTCTTGACGAAAATCTGCATG 293332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302231687200