Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_000899.1 Length=45063 Score E Sequences producing significant alignments: (Bits) Value seq52 80.6 8e-11 >seq52 Length=191592 Score = 80.6 bits (88), Expect = 8e-11 Identities = 121/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 1036 CCCCGAGGCGTG-TACGGGCGCATAGCCCCTCGTTCGGGCTTGGCCGTAAAGTTTTTTAT 1094 ||| |||| || |||||||| || || || |||||||| | || || ||| | || Sbjct 29262 CCCTGAGGGTTGCTACGGGCGTATTGCACCCCGTTCGGGTCTTGCAGTTAAGCATAGCAT 29321 Query 1095 CGATGTGGGAGCCGGTGTTATCGATAGCGATTACCGGGGCATCGTTAGCGTCCTCCTTTT 1154 |||||||||||| || || ||||| || ||| | |||| ||| | || | | || Sbjct 29322 CGATGTGGGAGCTGGCGTGATCGACGAAGACTACAGAGGCAATGTTGGAGTAGTATTGTT 29381 Query 1155 CAATTTTTCGGACCACAATTTCAACGTCCGTCGGGGCGATCGCATAGCTCA 1205 ||||||| | |||| ||| ||| | ||||||||||||||||||| Sbjct 29382 CAATTTTGGAAAAGACAAGTTCCGCGTACAGAGGGGCGATCGCATAGCTCA 29432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144072889291800