Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq974 315 3e-81 seq1066 284 5e-72 >seq974 Length=15858 Score = 315 bits (348), Expect = 3e-81 Identities = 559/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 |||| ||||||||| || || |||||| | ||||| ||| || | ||||||||||| Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 ||||| || | ||||||||||||| |||||| | |||||||||||| || || ||| Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 317 ||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| | Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630 Query 318 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 376 || ||||| |||| |||| ||| ||| ||| | || || || | ||| | || || Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571 Query 377 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 436 || || ||||| || || || | || | ||| || || |||| |||||| | Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511 Query 437 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGCGCTTCAATTGC 496 ||| || |||||| | | || | || | ||||| ||||| || | || || Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451 Query 497 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 556 || | |||||| | ||||| ||| || | ||| || || || ||||| || || || Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391 Query 557 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 616 ||| | ||| ||| |||| || | | || || || || |||||||| |||||||| || Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331 Query 617 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 676 ||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| || Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271 Query 677 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 736 |||||| ||||| ||||| |||| ||||| || || || |||| || || | || || Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211 Query 737 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 796 ||||| ||| ||| | | | | | || || | ||| | || || ||| || Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151 Query 797 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 855 | || |||| || || ||||| ||| |||||||| || |||| ||||||||||| | Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92 Query 856 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 915 | || || ||| | | ||||||| | | || ||||| | || | || Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32 Query 916 CGGTCAGTAAATCCTTCCTGATAAACAGCA 945 ||||||| ||||| ||||||||| |||||| Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2 >seq1066 Length=13853 Score = 284 bits (314), Expect = 5e-72 Identities = 250/313 (80%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 20460 GTCAAAGCAGCAATGGCGCTAGGGCGTCGTGCAATTGGCGTTGAGCTGGAGAGCGGGCGT 20519 ||||||||||| |||||||| ||||||||||||||||| || ||||||||| | ||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 20520 TTTGAGCAGACGGTCAGGGAAGTTCAGAATGTAGTCAGTCAGAACGGATGATATTGCAGG 20579 ||||||||||| | || || || |||||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 20580 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 20639 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 20640 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 20699 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 20700 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 20759 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 20760 CGATGGCGGTCCA 20772 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 114 bits (126), Expect = 5e-21 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19732 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTAT 19791 |||||||||||||| | ||||||||| || ||||||||||||| ||||||||| | Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 19792 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 19851 |||||||| |||||| | ||||||| || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 19852 AAATCACGTCCACAGTGCTGTGACGATGATG 19882 ||||| || || || || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Score = 96.9 bits (106), Expect = 1e-15 Identities = 182/264 (69%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 18257 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCGTCATGACAAGGTGAAACAATCC 18316 ||||| ||| |||||||||| ||| |||| ||||| | || | ||| || | | ||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 18317 ATTGAACGACTGGCGGTTCGAGGTGTGATCCGAAATCCCCCAATGGTGGTTTTCGAAAAA 18376 || || || ||||| || || ||||| | | ||| ||||| | || || Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 18377 -ATCAATAACTTAGG-ATTACTTCGTGGCGTAGAGGCTTACGTTTTTGAGGGCGAACAAG 18434 | |||| | |||| | || | | | | || || |||| || |||||||||| Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCAC--AAACGCATATATTTTCGAAGGCGAACAAG 9765 Query 18435 GTAAGCGCGACAGCATTATTGTCGTTGCCCAGTTGTCGCCGGAATTCACCGCTCGCCTTG 18494 | || ||||||||||| |||||||| || || | | ||||||||||| || ||||| | Sbjct 9764 GCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCCTGG 9705 Query 18495 TTGACCGCTGGCGAGAACTCGAAG 18518 | || || ||||| ||||| |||| Sbjct 9704 TAGATCGTTGGCGCGAACTGGAAG 9681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194883181553088