Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_000935.1
Length=36524
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 143 6e-30
>seq1066
Length=13853
Score = 143 bits (158), Expect = 6e-30
Identities = 140/178 (79%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 26883 CTGTTCCAGTTCTTGCCAACGATCAACCAGGCAAGCCGTAAATTCAGGGCAAAGTTGAGC 26942
|| ||||||||| |||||||||| ||||||| || || ||||| ||||||||||| ||
Sbjct 9679 CTCTTCCAGTTCGCGCCAACGATCTACCAGGCGGGCAGTGAATTCCGGGCAAAGTTGTGC 9738
Query 26943 AACAACAATAATGCTGTCACGTTTACCTTGTTCACCTTCAAAAATAAAAACTTCAGTAAA 27002
|| ||||| |||||||| ||||| |||||||| ||||| |||||| | | | || ||
Sbjct 9739 GACGACAATGATGCTGTCGCGTTTGCCTTGTTCGCCTTCGAAAATATATGCGTTTGTGAA 9798
Query 27003 GCGATTTGGGCTATTTGATTGTTTATTCTCAACTTTCTCAGATTG-AGGAAGTTGAAT 27059
||| ||||| |||||||| ||||||||||| | |||| ||||||||||||
Sbjct 9799 TTTGTTTTGGCTAAATGATTGTTCGTTCTCAACTTT-TTGCATTGCAGGAAGTTGAAT 9855
Score = 82.4 bits (90), Expect = 2e-11
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 28074 TGGCGGTGAACTGAACAGGGTTGAGACTACCGGCTAACAAGGAC-CCAGCGAGCCTTTCG 28132
||| || | ||||||||||||| ||||||||| | |||||| || ||||||||||||
Sbjct 8104 TGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACCGGCGAGCCTTTCG 8163
Query 28133 GCTCCCCCATCCAGCCCACCAT 28154
||||||| ||||||||||||
Sbjct 8164 GCTCCCCTGCCCAGCCCACCAT 8185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116749437838992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |