Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq1066 143 6e-30 >seq1066 Length=13853 Score = 143 bits (158), Expect = 6e-30 Identities = 140/178 (79%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 26883 CTGTTCCAGTTCTTGCCAACGATCAACCAGGCAAGCCGTAAATTCAGGGCAAAGTTGAGC 26942 || ||||||||| |||||||||| ||||||| || || ||||| ||||||||||| || Sbjct 9679 CTCTTCCAGTTCGCGCCAACGATCTACCAGGCGGGCAGTGAATTCCGGGCAAAGTTGTGC 9738 Query 26943 AACAACAATAATGCTGTCACGTTTACCTTGTTCACCTTCAAAAATAAAAACTTCAGTAAA 27002 || ||||| |||||||| ||||| |||||||| ||||| |||||| | | | || || Sbjct 9739 GACGACAATGATGCTGTCGCGTTTGCCTTGTTCGCCTTCGAAAATATATGCGTTTGTGAA 9798 Query 27003 GCGATTTGGGCTATTTGATTGTTTATTCTCAACTTTCTCAGATTG-AGGAAGTTGAAT 27059 ||| ||||| |||||||| ||||||||||| | |||| |||||||||||| Sbjct 9799 TTTGTTTTGGCTAAATGATTGTTCGTTCTCAACTTT-TTGCATTGCAGGAAGTTGAAT 9855 Score = 82.4 bits (90), Expect = 2e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 28074 TGGCGGTGAACTGAACAGGGTTGAGACTACCGGCTAACAAGGAC-CCAGCGAGCCTTTCG 28132 ||| || | ||||||||||||| ||||||||| | |||||| || |||||||||||| Sbjct 8104 TGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACCGGCGAGCCTTTCG 8163 Query 28133 GCTCCCCCATCCAGCCCACCAT 28154 ||||||| |||||||||||| Sbjct 8164 GCTCCCCTGCCCAGCCCACCAT 8185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116749437838992