Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq18 120 3e-22 >seq18 Length=263653 Score = 120 bits (132), Expect = 3e-22 Identities = 230/337 (68%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 16220 AGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGT 16279 ||| | || |||| | ||| || || ||| |||||| | ||||||||| || ||| Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283 Query 16280 TTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCA 16339 ||||||| |||||| |||| |||||| || ||||||||||||||||| || | ||| Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223 Query 16340 AAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCAT 16399 || || | | ||| || | | | | | ||| | |||||| | |||| Sbjct 150222 AATGCTACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAA 150163 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTCTTTTT 16457 ||||| || | || | || || || || ||||| || |||| | | | || Sbjct 150162 TCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCC 150103 Query 16458 CCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCT 16517 || || | || |||||||| |||||||| | ||| ||||| || ||||| || |||| Sbjct 150102 GCTTCATCTTGA--ATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045 Query 16518 CTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||| || || || || || || ||||| |||||||| Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTC 150008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511387832021920