Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18 174 2e-38 seq63 98.7 1e-15 >seq18 Length=263653 Score = 174 bits (192), Expect = 2e-38 Identities = 475/733 (65%), Gaps = 71/733 (10%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||||||||| ||||| | |||| || ||||| || |||||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| || ||| | ||||| | |||| || || | | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || | ||| || || | || || ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTAT---- 150466 Query 24084 GATCTTACTGTT----TCTTCACTCGG--TG-GATACAATAAATGTTTAAACATCAAACA 24136 ||||| | | |||| ||| | || | | ||| || ||| | |||||| Sbjct 150465 GATCTGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAG---TGAGAAAATAACAAACA 150409 Query 24137 TGCGAAATCGCAGTGTAGACCCT----------CGT---CTCTACTAATT---------A 24174 ||| ||||| ||||| ||||||| || || || |||| | Sbjct 150408 TGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTA 150349 Query 24175 AT----------------------------TCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 || || ||| ||| ||||| || ||||| || Sbjct 150348 ATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGA 150289 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 ||||| || || ||||| || || || ||||| |||||||||||| || || || || Sbjct 150288 CCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACG 150229 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC-----TGTCATGTATCCACTTTT 24321 || ||||| || | ||||| |||| | | || | |||| |||||| | Sbjct 150228 GCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTA 150171 Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381 ||||||||||||||||||| || || || || || ||||| || || || || || | || Sbjct 150170 GAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGT 150111 Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 24441 ||| ||||| || ||| || ||||||| ||||||||||| ||||| |||| Sbjct 150110 GGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAA 150051 Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501 | || || || || ||||| || ||||| || || | |||||| || | ||| | ||| Sbjct 150050 TATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCC 149991 Query 24502 TACAAAATCGTTC 24514 | |||| ||||| Sbjct 149990 GAGAAAAGCGTTC 149978 >seq63 Length=178715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTT 54326 |||||||| || |||| |||||| | | |||| | || || || || || ||| Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 | || || | |||||| ||| | |||||| ||||| ||||| || || || || ||| Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 | | || ||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 | |||||||| |||||||||||||| || | ||| || || |||| Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/168 (71%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| |||||||||||||| || |||||| ||| |||| | || || | || | Sbjct 173887 TCCACCCGTAAAAATGCATTGAAGTGAGTTTGCCATAGTTCGGGTGAGCCATGTATATGT 173828 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| ||| || || |||||||| | ||| |||||||| | ||||| || Sbjct 173827 TAAGGGATTGTGATTGGTCAATAAAGGCTCCACGGTCCGCAGCCATATCGATGATTACCT 173768 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 53041 | || ||||||||||||| || || || | ||||| |||||||| Sbjct 173767 TCTGAGGAATTTCCCAAACTGTCTTGTACAGCTCGC---GTATCTTCT 173723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593690756162880