Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq18 174 2e-38
seq63 98.7 1e-15
>seq18
Length=263653
Score = 174 bits (192), Expect = 2e-38
Identities = 475/733 (65%), Gaps = 71/733 (10%)
Strand=Plus/Minus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
||||||||||| ||||| | |||| || ||||| || |||||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963
||||| || ||| | ||||| | |||| || || | | | |||| ||| | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023
|| | ||| || || | || || ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083
|| || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| |||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTAT---- 150466
Query 24084 GATCTTACTGTT----TCTTCACTCGG--TG-GATACAATAAATGTTTAAACATCAAACA 24136
||||| | | |||| ||| | || | | ||| || ||| | ||||||
Sbjct 150465 GATCTGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAG---TGAGAAAATAACAAACA 150409
Query 24137 TGCGAAATCGCAGTGTAGACCCT----------CGT---CTCTACTAATT---------A 24174
||| ||||| ||||| ||||||| || || || |||| |
Sbjct 150408 TGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTA 150349
Query 24175 AT----------------------------TCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206
|| || ||| ||| ||||| || ||||| ||
Sbjct 150348 ATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGA 150289
Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266
||||| || || ||||| || || || ||||| |||||||||||| || || || ||
Sbjct 150288 CCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACG 150229
Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC-----TGTCATGTATCCACTTTT 24321
|| ||||| || | ||||| |||| | | || | |||| |||||| |
Sbjct 150228 GCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTA 150171
Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381
||||||||||||||||||| || || || || || ||||| || || || || || | ||
Sbjct 150170 GAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGT 150111
Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 24441
||| ||||| || ||| || ||||||| ||||||||||| ||||| ||||
Sbjct 150110 GGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAA 150051
Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501
| || || || || ||||| || ||||| || || | |||||| || | ||| | |||
Sbjct 150050 TATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCC 149991
Query 24502 TACAAAATCGTTC 24514
| |||| |||||
Sbjct 149990 GAGAAAAGCGTTC 149978
>seq63
Length=178715
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/225 (70%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTT 54326
|||||||| || |||| |||||| | | |||| | || || || || || |||
Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884
Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386
| || || | |||||| ||| | |||||| ||||| ||||| || || || || |||
Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824
Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446
| | || ||||| || ||| || || | | |||||| | ||||| | |||||
Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764
Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491
| |||||||| |||||||||||||| || | ||| || || ||||
Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/168 (71%), Gaps = 4/168 (2%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| |||||||||||||| || |||||| ||| |||| | || || | || |
Sbjct 173887 TCCACCCGTAAAAATGCATTGAAGTGAGTTTGCCATAGTTCGGGTGAGCCATGTATATGT 173828
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
| | ||||| ||| || || |||||||| | ||| |||||||| | ||||| ||
Sbjct 173827 TAAGGGATTGTGATTGGTCAATAAAGGCTCCACGGTCCGCAGCCATATCGATGATTACCT 173768
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 53041
| || ||||||||||||| || || || | ||||| ||||||||
Sbjct 173767 TCTGAGGAATTTCCCAAACTGTCTTGTACAGCTCGC---GTATCTTCT 173723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593690756162880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |