Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_001901.1
Length=46375
Score E
Sequences producing significant alignments: (Bits) Value
seq1754 497 3e-136
seq1066 104 7e-18
>seq1754
Length=5669
Score = 497 bits (550), Expect = 3e-136
Identities = 517/677 (76%), Gaps = 1/677 (0%)
Strand=Plus/Plus
Query 39896 TCAATACACAGCATGAATATCAATGCTTGCACCGCAAGCCTTAGCGTATCGAGATAGTGT 39955
|||||| ||||| |||||||| ||| |||| || || || | ||| ||| | | ||
Sbjct 1684 TCAATAGACAGCGTGAATATCGATGGTTGCGCCACAGGCATGAGCATATTTTGTCAAAGT 1743
Query 39956 CTTCATGCTGGCACCTAGTGGGTTGCTTTCCAGGCGGCTAATTGCTGATGGCTGCAACCC 40015
||||||||||| |||| ||||| ||||||||||| || || ||||| || | |||||
Sbjct 1744 TTTCATGCTGGCCCCTAAAGGGTTACTTTCCAGGCGACTGATGGCTGACGGGCGTAACCC 1803
Query 40016 CATGCGTTCAGCCAGCGCAGACTTCGTCAGGCCAGCTTTCTCCCTCATCTCGTAGAGCAT 40075
||| ||||| ||||| || ||||| || | || ||||| || ||||| ||||| | |||
Sbjct 1804 CATTCGTTCGGCCAGTGCTGACTTTGTTAATCCCGCTTTTTCTCTCATTTCGTATAACAT 1863
Query 40076 TTCAACCATCGCCAACTCCTTGTCGGCATCTTCGTAACCCCGGATAGCCTCCGGGGTATT 40135
||| |||||| ||| || ||||| ||||| || || || || ||| || || ||| |
Sbjct 1864 TTCCACCATCTCCAGTTCTTTGTCAGCATCCTCATACCCTTTGACAGCTTCTGGAGTACT 1923
Query 40136 GAGCAGTTCTTCTTTCACCTGATTAAATGGGATGCCTTTTACTTTCATTAGCTCATCTCC 40195
||| |||| || || ||||| | ||||| | |||||||||||||| || ||||||||
Sbjct 1924 GAGTAGTTTTTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCAGTTCATCTCC 1983
Query 40196 TTCAGACGCGTTCTGGCGATATCAATTGCGTGGGTAGGCGTCTTTTGCGTCTTCTTAACA 40255
||||||||| | ||||| || ||||| || | || || ||||||||||| || || |||
Sbjct 1984 TTCAGACGCATCCTGGCAATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTTTTTTTCACA 2043
Query 40256 AATGCATGTAGCAGATAAATTTCGTTACCTACCGCGTAAGCGTACAGCGTTCTCGCTATG 40315
|||||||| |||||||| ||||||||||| || ||||||||||| || || || ||
Sbjct 2044 AATGCATGCAGCAGATAGATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATA 2103
Query 40316 TTTTTATCCCCTACCCTTAGTTCGAAAAGGCCACCACCGATAACGCGGCTATGAGGCATT 40375
||||||||||| || || ||||| ||||| || || || || || ||||| |||||||||
Sbjct 2104 TTTTTATCCCCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGCATT 2163
Query 40376 TTCAGCTTGTTCCCTTCACTTTCCAGTCTCTCGATCAGCCGGGTCATGCGACCGCGTAGC 40435
|||| ||||| ||||| |||||| | || ||||| | |||||| ||||| || ||
Sbjct 2164 TTCATTTTGTTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGTCATACGACCACGCAGA 2223
Query 40436 TCATCAGGTAATTCTTTAAGCTCATCCAGCGCTGCCGGGTGGGTTATCACGTTAAACATA 40495
| || ||||||||| ||| |||||||| || |||||||| || ||||| |||||||||
Sbjct 2224 TTGTCTGGTAATTCTAGAAGTTCATCCAGTGCGGCCGGGTGAGTAATCACATTAAACATA 2283
Query 40496 GTATAACCTCCTGATGTGGaaaatatactaaaaacgtaaaaatcacacaataggcaaatt 40555
|||| ||||| || |||||| ||| ||||| ||||| | ||| | |||||
Sbjct 2284 TTATAGCCTCCAGAATGACAAAATACACT-AAAACAGGAAAATTGCGCAAACAGTAAATT 2342
Query 40556 tcactaaaaagtgaaaa 40572
||| || || ||||||
Sbjct 2343 TCATCAATAAATGAAAA 2359
>seq1066
Length=13853
Score = 104 bits (114), Expect = 7e-18
Identities = 245/368 (67%), Gaps = 4/368 (1%)
Strand=Plus/Minus
Query 41428 CGCAGATTCTCTGCAATTCATAAAAACCATCCCTGATAATTCCGTAAACCTGATCGCGAC 41487
||| |||| ||||| || || | || | |||||| ||||| | ||||||| | ||
Sbjct 1317 CGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTAC 1258
Query 41488 AGACCCGCCCTATTTTGGCGTTAAGTCGAACGACTGGGACAACCAGTGGGAAAGTGACGC 41547
||| ||||| || || || || | |||||||||||||| |||||| || ||||
Sbjct 1257 AGATCCGCCGTACTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGA 1198
Query 41548 GGACTTTTTGGGCTGGCTTGATGAGTTTCTGGCGGAGTTCTGGAGGATACTGGCCCCAAA 41607
|| | | ||||| || | | |||||| |||||||| || | || ||
Sbjct 1197 AGATTACCTTAAGTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTC 1138
Query 41608 TGGAAGCCTGTATATGTTTTCCGGTTCGCGGCTTGCGGCAAAAGTTGAATTACTTACCCG 41667
||||| || || |||| | ||| || || || | | | ||| | | | ||
Sbjct 1137 CGGAAGTCTTTACCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCG 1078
Query 41668 CGACCGTTTCAATGTTTTGAACCACATCACCTGGGCTAAACCGAGCGGTGTATGG--CGG 41725
|| || || ||||| |||||||||| | |||||| || ||| ||| ||| |||
Sbjct 1077 TGAACGCTTTAATGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGG 1018
Query 41726 CGGCAAAATAAAGAGAGCCTGCGAGCATTCTTCCCGGCAACCGAGCGCATCATATTCGCT 41785
|| || || || |||||||| || | ||||| || || |||||||| | |||||
Sbjct 1017 GTGC--AACAAGGAAAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCG 960
Query 41786 GAACATTA 41793
||||||||
Sbjct 959 GAACATTA 952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148271082090264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |