Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq1754 497 3e-136 seq1066 104 7e-18 >seq1754 Length=5669 Score = 497 bits (550), Expect = 3e-136 Identities = 517/677 (76%), Gaps = 1/677 (0%) Strand=Plus/Plus Query 39896 TCAATACACAGCATGAATATCAATGCTTGCACCGCAAGCCTTAGCGTATCGAGATAGTGT 39955 |||||| ||||| |||||||| ||| |||| || || || | ||| ||| | | || Sbjct 1684 TCAATAGACAGCGTGAATATCGATGGTTGCGCCACAGGCATGAGCATATTTTGTCAAAGT 1743 Query 39956 CTTCATGCTGGCACCTAGTGGGTTGCTTTCCAGGCGGCTAATTGCTGATGGCTGCAACCC 40015 ||||||||||| |||| ||||| ||||||||||| || || ||||| || | ||||| Sbjct 1744 TTTCATGCTGGCCCCTAAAGGGTTACTTTCCAGGCGACTGATGGCTGACGGGCGTAACCC 1803 Query 40016 CATGCGTTCAGCCAGCGCAGACTTCGTCAGGCCAGCTTTCTCCCTCATCTCGTAGAGCAT 40075 ||| ||||| ||||| || ||||| || | || ||||| || ||||| ||||| | ||| Sbjct 1804 CATTCGTTCGGCCAGTGCTGACTTTGTTAATCCCGCTTTTTCTCTCATTTCGTATAACAT 1863 Query 40076 TTCAACCATCGCCAACTCCTTGTCGGCATCTTCGTAACCCCGGATAGCCTCCGGGGTATT 40135 ||| |||||| ||| || ||||| ||||| || || || || ||| || || ||| | Sbjct 1864 TTCCACCATCTCCAGTTCTTTGTCAGCATCCTCATACCCTTTGACAGCTTCTGGAGTACT 1923 Query 40136 GAGCAGTTCTTCTTTCACCTGATTAAATGGGATGCCTTTTACTTTCATTAGCTCATCTCC 40195 ||| |||| || || ||||| | ||||| | |||||||||||||| || |||||||| Sbjct 1924 GAGTAGTTTTTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCAGTTCATCTCC 1983 Query 40196 TTCAGACGCGTTCTGGCGATATCAATTGCGTGGGTAGGCGTCTTTTGCGTCTTCTTAACA 40255 ||||||||| | ||||| || ||||| || | || || ||||||||||| || || ||| Sbjct 1984 TTCAGACGCATCCTGGCAATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTTTTTTTCACA 2043 Query 40256 AATGCATGTAGCAGATAAATTTCGTTACCTACCGCGTAAGCGTACAGCGTTCTCGCTATG 40315 |||||||| |||||||| ||||||||||| || ||||||||||| || || || || Sbjct 2044 AATGCATGCAGCAGATAGATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATA 2103 Query 40316 TTTTTATCCCCTACCCTTAGTTCGAAAAGGCCACCACCGATAACGCGGCTATGAGGCATT 40375 ||||||||||| || || ||||| ||||| || || || || || ||||| ||||||||| Sbjct 2104 TTTTTATCCCCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGCATT 2163 Query 40376 TTCAGCTTGTTCCCTTCACTTTCCAGTCTCTCGATCAGCCGGGTCATGCGACCGCGTAGC 40435 |||| ||||| ||||| |||||| | || ||||| | |||||| ||||| || || Sbjct 2164 TTCATTTTGTTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGTCATACGACCACGCAGA 2223 Query 40436 TCATCAGGTAATTCTTTAAGCTCATCCAGCGCTGCCGGGTGGGTTATCACGTTAAACATA 40495 | || ||||||||| ||| |||||||| || |||||||| || ||||| ||||||||| Sbjct 2224 TTGTCTGGTAATTCTAGAAGTTCATCCAGTGCGGCCGGGTGAGTAATCACATTAAACATA 2283 Query 40496 GTATAACCTCCTGATGTGGaaaatatactaaaaacgtaaaaatcacacaataggcaaatt 40555 |||| ||||| || |||||| ||| ||||| ||||| | ||| | ||||| Sbjct 2284 TTATAGCCTCCAGAATGACAAAATACACT-AAAACAGGAAAATTGCGCAAACAGTAAATT 2342 Query 40556 tcactaaaaagtgaaaa 40572 ||| || || |||||| Sbjct 2343 TCATCAATAAATGAAAA 2359 >seq1066 Length=13853 Score = 104 bits (114), Expect = 7e-18 Identities = 245/368 (67%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 41428 CGCAGATTCTCTGCAATTCATAAAAACCATCCCTGATAATTCCGTAAACCTGATCGCGAC 41487 ||| |||| ||||| || || | || | |||||| ||||| | ||||||| | || Sbjct 1317 CGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTAC 1258 Query 41488 AGACCCGCCCTATTTTGGCGTTAAGTCGAACGACTGGGACAACCAGTGGGAAAGTGACGC 41547 ||| ||||| || || || || | |||||||||||||| |||||| || |||| Sbjct 1257 AGATCCGCCGTACTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGA 1198 Query 41548 GGACTTTTTGGGCTGGCTTGATGAGTTTCTGGCGGAGTTCTGGAGGATACTGGCCCCAAA 41607 || | | ||||| || | | |||||| |||||||| || | || || Sbjct 1197 AGATTACCTTAAGTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTC 1138 Query 41608 TGGAAGCCTGTATATGTTTTCCGGTTCGCGGCTTGCGGCAAAAGTTGAATTACTTACCCG 41667 ||||| || || |||| | ||| || || || | | | ||| | | | || Sbjct 1137 CGGAAGTCTTTACCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCG 1078 Query 41668 CGACCGTTTCAATGTTTTGAACCACATCACCTGGGCTAAACCGAGCGGTGTATGG--CGG 41725 || || || ||||| |||||||||| | |||||| || ||| ||| ||| ||| Sbjct 1077 TGAACGCTTTAATGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGG 1018 Query 41726 CGGCAAAATAAAGAGAGCCTGCGAGCATTCTTCCCGGCAACCGAGCGCATCATATTCGCT 41785 || || || || |||||||| || | ||||| || || |||||||| | ||||| Sbjct 1017 GTGC--AACAAGGAAAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCG 960 Query 41786 GAACATTA 41793 |||||||| Sbjct 959 GAACATTA 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148271082090264