Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq18 196 5e-45
>seq18
Length=263653
Score = 196 bits (216), Expect = 5e-45
Identities = 266/371 (72%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| || || || ||| ||| | |||||| | ||||| || ||||| |||||||| ||
Sbjct 149974 GGTTGAACGCTTTTCTCGGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCA 150033
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922
|| || || ||||| | |||||||| |||||| || || |||||||| | |
Sbjct 150034 AATTGCTATAGAGAATATTCACTCGGAGATGTATAGTCTGCTGATTGACACGTATATTCA 150093
Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982
| | ||| | || |||| |||||||| ||||| || || ||||| || |
Sbjct 150094 AGATGAAGCGGAACGCCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAA 150153
Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042
||||||||| ||||| || || ||||| || | || | || | | ||| | || || ||
Sbjct 150154 GAAGGCCGATTGGGCTCTACGATGGATAGCGGACAAAAAGTCACCATTCAGAGATCGACT 150213
Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102
|| || || || ||||||||||| | |||||||| || || || || | || || ||
Sbjct 150214 TGTAGCATTTGCCGCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTG 150273
Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162
||| |||||||| || |||||||| || || ||||| ||||| |||||||||||| | ||
Sbjct 150274 GCTAAAGAAACGTGGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGA 150333
Query 117163 CGAGGGTCTGC 117173
|||| ||||
Sbjct 150334 TGAGGTACTGC 150344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515192434362560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |