Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 196 5e-45 >seq18 Length=263653 Score = 196 bits (216), Expect = 5e-45 Identities = 266/371 (72%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || || ||| ||| | |||||| | ||||| || ||||| |||||||| || Sbjct 149974 GGTTGAACGCTTTTCTCGGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCA 150033 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 || || || ||||| | |||||||| |||||| || || |||||||| | | Sbjct 150034 AATTGCTATAGAGAATATTCACTCGGAGATGTATAGTCTGCTGATTGACACGTATATTCA 150093 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | | ||| | || |||| |||||||| ||||| || || ||||| || | Sbjct 150094 AGATGAAGCGGAACGCCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAA 150153 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 ||||||||| ||||| || || ||||| || | || | || | | ||| | || || || Sbjct 150154 GAAGGCCGATTGGGCTCTACGATGGATAGCGGACAAAAAGTCACCATTCAGAGATCGACT 150213 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 || || || || ||||||||||| | |||||||| || || || || | || || || Sbjct 150214 TGTAGCATTTGCCGCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTG 150273 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||| |||||||| || |||||||| || || ||||| ||||| |||||||||||| | || Sbjct 150274 GCTAAAGAAACGTGGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGA 150333 Query 117163 CGAGGGTCTGC 117173 |||| |||| Sbjct 150334 TGAGGTACTGC 150344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515192434362560