Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002166.1
Length=40751
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 95.1 3e-15
>seq1066
Length=13853
Score = 95.1 bits (104), Expect = 3e-15
Identities = 185/271 (68%), Gaps = 13/271 (5%)
Strand=Plus/Minus
Query 34688 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 34747
||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | ||||
Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883
Query 34748 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 34807
||||| | ||| ||||| || || || | | ||||||| |||| | | | |
Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823
Query 34808 -ATCAATGATTTAGGTGTTA----TTACCGGGAAGCGTGATTTCTACGTCTTCGAGGGCG 34862
| |||| |||||| | || | || || || | ||||| ||||
Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCAC---AAACGCA-----TATATTTTCGAAGGCG 9771
Query 34863 AACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTC 34922
||||||| || || |||||||| ||||||||||| || | | ||||||||||| || |
Sbjct 9770 AACAAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCC 9711
Query 34923 GTCTTGTTGACCGTTGGCGAGAGCTTGAAGA 34953
| || || || |||||||| || || |||||
Sbjct 9710 GCCTGGTAGATCGTTGGCGCGAACTGGAAGA 9680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130275170277336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |