Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq1066 95.1 3e-15 >seq1066 Length=13853 Score = 95.1 bits (104), Expect = 3e-15 Identities = 185/271 (68%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 34688 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 34747 ||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | |||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 34748 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 34807 ||||| | ||| ||||| || || || | | ||||||| |||| | | | | Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 34808 -ATCAATGATTTAGGTGTTA----TTACCGGGAAGCGTGATTTCTACGTCTTCGAGGGCG 34862 | |||| |||||| | || | || || || | ||||| |||| Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCAC---AAACGCA-----TATATTTTCGAAGGCG 9771 Query 34863 AACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTC 34922 ||||||| || || |||||||| ||||||||||| || | | ||||||||||| || | Sbjct 9770 AACAAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCC 9711 Query 34923 GTCTTGTTGACCGTTGGCGAGAGCTTGAAGA 34953 | || || || |||||||| || || ||||| Sbjct 9710 GCCTGGTAGATCGTTGGCGCGAACTGGAAGA 9680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130275170277336