Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq1066 91.5 4e-14 seq1103 86.0 2e-12 >seq1066 Length=13853 Score = 91.5 bits (100), Expect = 4e-14 Identities = 184/271 (68%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 33673 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 33732 ||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | |||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 33733 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 33792 ||||| | ||| ||||| || || || | | ||||||| |||| | | | | Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 33793 -ATCAATGATTTAGGTGTTA----TTACCGGGAAGCGTGATTTCTACGTCTTCGAAGGCG 33847 | |||| |||||| | || | || || || | |||||||||| Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCAC---AAACGCA-----TATATTTTCGAAGGCG 9771 Query 33848 AAAAAGGTAAGCGCGATAGCATTATTGTCGTTGCCCAGTTGTCGCCGGAATTCACCGCTC 33907 || |||| || ||||| ||||| |||||||| || || | | ||||||||||| || | Sbjct 9770 AACAAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCC 9711 Query 33908 GCCTTGTTGACCGCTGGCGAGAGCTTGAAGA 33938 |||| || || || ||||| || || ||||| Sbjct 9710 GCCTGGTAGATCGTTGGCGCGAACTGGAAGA 9680 >seq1103 Length=13301 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 11388 TTTTTGCTTTTGCCAAAGGAGCGGGTGTGTTTGCAGAGGCTGGACCTGAAGCCATTATGC 11447 ||||||||||||| ||||| ||||||||| | | || || ||||||||||||||| ||| Sbjct 11724 TTTTTGCTTTTGCAAAAGGCGCGGGTGTGATGGGGGAAGCGGGACCTGAAGCCATTCTGC 11665 Query 11448 CGCTTACCCGTGCTGCTGATGGTTCGCTTGGCGTTCGGGCTGTTGGCACTGGTGGT 11503 | || || | |||||||||| ||| || ||| ||| | | ||||||||| Sbjct 11664 CACTGCGTCGCGGTGCTGATGGTAAGCTGGGGGTTGTGGCGGAT---ACTGGTGGT 11612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127014531205968