Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002185.1 Length=35466 Score E Sequences producing significant alignments: (Bits) Value seq729 100 6e-17 >seq729 Length=25020 Score = 100 bits (110), Expect = 6e-17 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 5472 GCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGC 5531 || || || ||||| |||| | || | || | || || || || ||||||||||| Sbjct 1232 GCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGT 1173 Query 5532 GTTATCTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTAATT 5591 || || ||||| | ||| |||| ||| ||||||| || ||||| | | | Sbjct 1172 GTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTA 1113 Query 5592 GGAATCACTGGACGTATTCAGACTCGTAGCTATGAAAACCAACAGGGTCAACGAGTGTAT 5651 || | ||||| ||||| || || | | |||||||| || || || ||||| || ||| Sbjct 1112 GGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTAT 1053 Query 5652 GTGACAGAGGTAGTCGCTGAGAATTTCCAA 5681 |||||||| || || ||||||||||||||| Sbjct 1052 GTGACAGAAGTTGTTGCTGAGAATTTCCAA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113364004926816