Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20 114 1e-20 seq69 111 2e-19 seq3004 109 6e-19 seq367 109 6e-19 seq2384 107 2e-18 seq1622 107 2e-18 seq314 107 2e-18 seq248 107 2e-18 seq85 107 2e-18 seq2273 105 8e-18 seq1889 105 8e-18 seq1452 105 8e-18 seq211 105 8e-18 >seq20 Length=252424 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| |||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct 113464 AAATTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 113523 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 113524 CACCACTATACTACCGAGGAT 113544 >seq69 Length=173048 Score = 111 bits (122), Expect = 2e-19 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 || ||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||| Sbjct 154915 AACTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCA 154856 Query 60120 CCACTATACTACCGAGGA-TTGAATATATAACTTGA 60154 |||||||||||||||||| | | | | |||||| || Sbjct 154855 CCACTATACTACCGAGGAGTGGTAGAAATAACTGGA 154820 >seq3004 Length=1818 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 1585 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1526 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 1525 CTATACTACCGAGGA 1511 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||| | Sbjct 775 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 716 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 715 CACTATACTACCGAGGA 699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| || Sbjct 244 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAATA 303 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 304 TACTACCGAGGA 315 >seq367 Length=53538 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 1903 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1844 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 1843 CTATACTACCGAGGA 1829 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 233 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 292 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 293 ATACTACCGAGGA 305 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 8412 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8471 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 8472 ATACTACCGAGGA 8484 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||| | Sbjct 765 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 706 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 705 CACTATACTACCGAGGA 689 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 7330 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 7389 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 7390 TACTACCGAGGA 7401 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 8200 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 8141 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 8140 CTATACTACCGAGGA 8126 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 8844 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8903 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 8904 TACTACCGAGGA 8915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 8620 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8561 Query 60125 ATAC 60128 |||| Sbjct 8560 ATAC 8557 >seq2384 Length=3046 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 867 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 808 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 807 TATACTACCGAGGA 794 >seq1622 Length=6696 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 5941 TTGCTCCGCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 5882 Query 60123 CTATACTACCGAGGATT 60139 ||||||||||||||||| Sbjct 5881 CTATACTACCGAGGATT 5865 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||| Sbjct 6158 TTTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACC 6217 Query 60122 ACTATACTACCGAGGA 60137 |||||||||||||||| Sbjct 6218 ACTATACTACCGAGGA 6233 >seq314 Length=61125 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 13979 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 14038 Query 60124 TATACTACCGAGGATTG 60140 |||||||||||||| || Sbjct 14039 TATACTACCGAGGACTG 14055 >seq248 Length=74676 Score = 107 bits (118), Expect = 2e-18 Identities = 74/83 (89%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 60058 AAAATT---TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| |||||| |||| ||||||||||||| |||| |||||||||||||||| || Sbjct 7435 AAAATTACATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 7494 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||||| Sbjct 7495 ACTCACCACTATACTACCGAGGA 7517 >seq85 Length=158702 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || ||||||| |||| |||| ||||||||||||| |||| |||||||||||||||| Sbjct 1769 TAGGAAAAATC--CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGA 1826 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||||| Sbjct 1827 ATACTCACCACTATACTACCGAGGAT 1852 >seq2273 Length=3399 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 2891 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 2832 Query 60125 ATACTACCGAGGATTG 60140 ||||||||||||| || Sbjct 2831 ATACTACCGAGGACTG 2816 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 3102 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 3161 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 3162 TACTACCGAGGACTG 3176 >seq1889 Length=4748 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| |||| Sbjct 2157 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2216 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 2217 TCACCACTATACTACCGAGGA 2237 >seq1452 Length=8395 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| |||| Sbjct 4651 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 4592 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4591 TCACCACTATACTACCGAGGA 4571 >seq211 Length=86670 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| |||| Sbjct 2063 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2004 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 2003 TCACCACTATACTACCGAGGA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571787894075680