Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq20 114 1e-20
seq69 111 2e-19
seq3004 109 6e-19
seq367 109 6e-19
seq2384 107 2e-18
seq1622 107 2e-18
seq314 107 2e-18
seq248 107 2e-18
seq85 107 2e-18
seq2273 105 8e-18
seq1889 105 8e-18
seq1452 105 8e-18
seq211 105 8e-18
>seq20
Length=252424
Score = 114 bits (126), Expect = 1e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
||| |||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||
Sbjct 113464 AAATTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 113523
Query 60118 CACCACTATACTACCGAGGAT 60138
|||||||||||||||||||||
Sbjct 113524 CACCACTATACTACCGAGGAT 113544
>seq69
Length=173048
Score = 111 bits (122), Expect = 2e-19
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119
|| ||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 154915 AACTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCA 154856
Query 60120 CCACTATACTACCGAGGA-TTGAATATATAACTTGA 60154
|||||||||||||||||| | | | | |||||| ||
Sbjct 154855 CCACTATACTACCGAGGAGTGGTAGAAATAACTGGA 154820
>seq3004
Length=1818
Score = 109 bits (120), Expect = 6e-19
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 1585 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1526
Query 60123 CTATACTACCGAGGA 60137
|||||||||||||||
Sbjct 1525 CTATACTACCGAGGA 1511
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
||| ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||| |
Sbjct 775 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 716
Query 60121 CACTATACTACCGAGGA 60137
|||||||||||||||||
Sbjct 715 CACTATACTACCGAGGA 699
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| ||
Sbjct 244 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAATA 303
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 304 TACTACCGAGGA 315
>seq367
Length=53538
Score = 109 bits (120), Expect = 6e-19
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 1903 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1844
Query 60123 CTATACTACCGAGGA 60137
|||||||||||||||
Sbjct 1843 CTATACTACCGAGGA 1829
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 233 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 292
Query 60125 ATACTACCGAGGA 60137
|||||||||||||
Sbjct 293 ATACTACCGAGGA 305
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 8412 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8471
Query 60125 ATACTACCGAGGA 60137
|||||||||||||
Sbjct 8472 ATACTACCGAGGA 8484
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
||| ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||| |
Sbjct 765 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 706
Query 60121 CACTATACTACCGAGGA 60137
|||||||||||||||||
Sbjct 705 CACTATACTACCGAGGA 689
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 7330 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 7389
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 7390 TACTACCGAGGA 7401
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 8200 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 8141
Query 60123 CTATACTACCGAGGA 60137
|||||||||||||||
Sbjct 8140 CTATACTACCGAGGA 8126
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 8844 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8903
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 8904 TACTACCGAGGA 8915
Score = 89.7 bits (98), Expect = 6e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 8620 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8561
Query 60125 ATAC 60128
||||
Sbjct 8560 ATAC 8557
>seq2384
Length=3046
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 867 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 808
Query 60124 TATACTACCGAGGA 60137
||||||||||||||
Sbjct 807 TATACTACCGAGGA 794
>seq1622
Length=6696
Score = 107 bits (118), Expect = 2e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 5941 TTGCTCCGCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 5882
Query 60123 CTATACTACCGAGGATT 60139
|||||||||||||||||
Sbjct 5881 CTATACTACCGAGGATT 5865
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 6158 TTTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACC 6217
Query 60122 ACTATACTACCGAGGA 60137
||||||||||||||||
Sbjct 6218 ACTATACTACCGAGGA 6233
>seq314
Length=61125
Score = 107 bits (118), Expect = 2e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 13979 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 14038
Query 60124 TATACTACCGAGGATTG 60140
|||||||||||||| ||
Sbjct 14039 TATACTACCGAGGACTG 14055
>seq248
Length=74676
Score = 107 bits (118), Expect = 2e-18
Identities = 74/83 (89%), Gaps = 3/83 (4%)
Strand=Plus/Plus
Query 60058 AAAATT---TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|||||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 7435 AAAATTACATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 7494
Query 60115 ACTCACCACTATACTACCGAGGA 60137
|||||||||||||||||||||||
Sbjct 7495 ACTCACCACTATACTACCGAGGA 7517
>seq85
Length=158702
Score = 107 bits (118), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112
|| ||||||| |||| |||| ||||||||||||| |||| ||||||||||||||||
Sbjct 1769 TAGGAAAAATC--CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGA 1826
Query 60113 ATACTCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||||||
Sbjct 1827 ATACTCACCACTATACTACCGAGGAT 1852
>seq2273
Length=3399
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 2891 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 2832
Query 60125 ATACTACCGAGGATTG 60140
||||||||||||| ||
Sbjct 2831 ATACTACCGAGGACTG 2816
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 3102 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 3161
Query 60126 TACTACCGAGGATTG 60140
|||||||||||| ||
Sbjct 3162 TACTACCGAGGACTG 3176
>seq1889
Length=4748
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| ||||
Sbjct 2157 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2216
Query 60117 TCACCACTATACTACCGAGGA 60137
|||||||||||||||||||||
Sbjct 2217 TCACCACTATACTACCGAGGA 2237
>seq1452
Length=8395
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| ||||
Sbjct 4651 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 4592
Query 60117 TCACCACTATACTACCGAGGA 60137
|||||||||||||||||||||
Sbjct 4591 TCACCACTATACTACCGAGGA 4571
>seq211
Length=86670
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| |||| |||||||||||||||| ||||
Sbjct 2063 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2004
Query 60117 TCACCACTATACTACCGAGGA 60137
|||||||||||||||||||||
Sbjct 2003 TCACCACTATACTACCGAGGA 1983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571787894075680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |