Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002486.1
Length=45636
Score E
Sequences producing significant alignments: (Bits) Value
seq729 86.0 2e-12
>seq729
Length=25020
Score = 86.0 bits (94), Expect = 2e-12
Identities = 202/301 (67%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 8382 GTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGA-ACAACGCCGAATGGTGTGAG 8440
||| |||| || || |||||||| ||||| || | | ||| ||| |||||| |
Sbjct 1310 GTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCA-AATGGTACAGG 1252
Query 8441 TGTTACCACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAG---AACG 8497
|||| |||| || ||| | || || || | | ||||| || |||| | | | ||
Sbjct 1251 TGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAA---TCAAAGCGGGAATCG 1195
Query 8498 TGAGGCAGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAAATGTAAATCATTA 8557
||||| || ||||| || ||||||| || | ||| |||||||| | || | ||||
Sbjct 1194 CGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTA 1135
Query 8558 TTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGCAGTTATGAAAA 8617
| |||||| | | || || ||| ||| | ||| || | | |||||||||
Sbjct 1134 TGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAA 1075
Query 8618 CAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGA 8677
| | ||||||||||| | ||| |||||||| || || || | | | ||||| || ||
Sbjct 1074 TCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGA 1015
Query 8678 A 8678
|
Sbjct 1014 A 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145906398799056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |