Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq18 125 7e-24 >seq18 Length=263653 Score = 125 bits (138), Expect = 7e-24 Identities = 212/305 (70%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||| || || |||||||| || || ||||| || | ||| || || | ||||| || Sbjct 150310 AAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCC 150251 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||||||||||||||| || || ||||||||||| || | ||| || | | | | | || Sbjct 150250 AGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTCTGAATGGTGACTT 150191 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 ||| |||||||| | |||||||| || || | ||||| || ||| |||| Sbjct 150190 TTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTC 150131 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGT 16522 || || || || | | | ||| ||| |||| |||||| || || || || Sbjct 150130 AATGGCGTTGAACAGGTGGTGGCGTTC--CGCTTCATCTTGAATATACGTGTCAATCAGC 150073 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | ||||||||| || || ||||||||||| || || || || || || |||||||| | | Sbjct 150072 AGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGA 150013 Query 16583 GCTTC 16587 || || Sbjct 150012 GCCTC 150008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462487972501600