Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002667.1
Length=41834
Score E
Sequences producing significant alignments: (Bits) Value
seq729 127 5e-25
>seq729
Length=25020
Score = 127 bits (140), Expect = 5e-25
Identities = 222/317 (70%), Gaps = 12/317 (4%)
Strand=Plus/Minus
Query 7034 TGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACAC 7093
||||||| ||||| ||||| || || | || || || ||||| | | || |||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTA--CAC 1267
Query 7094 CACAAAA--TAAAGCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGC 7151
| |||| || || |||||||| |||||| | || || ||||| |||| ||| |
Sbjct 1266 CGCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-C 1208
Query 7152 TAATGGAGAAA-GAGAAGCTGACTTTATCAATTGTGTTATTTGGGGTAAATCAGCCGAAA 7210
|| | ||| | || || || |||||||||||||| |||||| | |||||||| ||||
Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAA 1148
Query 7211 ACTTGGCCAATTGGACTCATAAAGG---TCAATTAATCGGAGTTACTGGTAGTATTCAAA 7267
|| || |||| | | ||||| || ||| || || ||||| |||| ||||
Sbjct 1147 CTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTA---GGTGTGACTGGCCGTATCCAAA 1091
Query 7268 CTCGAAACTACGAGAACCAACAAGGTCAACGAGTTTATGTAACAGAAGTCATTGCAAACA 7327
| |||| || || || || ||||| ||||| || ||||| |||||||| |||| | |
Sbjct 1090 CAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGA 1031
Query 7328 ATTTCCAAGTACTTGAA 7344
|||||||| || | |||
Sbjct 1030 ATTTCCAATTATTGGAA 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133740599241312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |