Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq729 127 5e-25 >seq729 Length=25020 Score = 127 bits (140), Expect = 5e-25 Identities = 222/317 (70%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 7034 TGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACAC 7093 ||||||| ||||| ||||| || || | || || || ||||| | | || ||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTA--CAC 1267 Query 7094 CACAAAA--TAAAGCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGC 7151 | |||| || || |||||||| |||||| | || || ||||| |||| ||| | Sbjct 1266 CGCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-C 1208 Query 7152 TAATGGAGAAA-GAGAAGCTGACTTTATCAATTGTGTTATTTGGGGTAAATCAGCCGAAA 7210 || | ||| | || || || |||||||||||||| |||||| | |||||||| |||| Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAA 1148 Query 7211 ACTTGGCCAATTGGACTCATAAAGG---TCAATTAATCGGAGTTACTGGTAGTATTCAAA 7267 || || |||| | | ||||| || ||| || || ||||| |||| |||| Sbjct 1147 CTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTA---GGTGTGACTGGCCGTATCCAAA 1091 Query 7268 CTCGAAACTACGAGAACCAACAAGGTCAACGAGTTTATGTAACAGAAGTCATTGCAAACA 7327 | |||| || || || || ||||| ||||| || ||||| |||||||| |||| | | Sbjct 1090 CAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGA 1031 Query 7328 ATTTCCAAGTACTTGAA 7344 |||||||| || | ||| Sbjct 1030 ATTTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133740599241312