Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq1227 150 2e-32 >seq1227 Length=11128 Score = 150 bits (166), Expect = 2e-32 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAA 14585 || || ||||||||||||||||| ||||| ||||| ||||| ||||||||| ||||| Sbjct 10301 AAAGGTACAGTAAAATGGTTTAATGCAGAAAAAGGTTTTGGTTTTATCACTGGTGAAGAT 10360 Query 14586 GGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGAT 14645 ||||| ||| |||| ||||| |||||||| || ||| ||| || || ||||| | ||| Sbjct 10361 GGCAACGATGTGTTTGCTCATTTCTCAGCTATTCAAGGTGAAGGTTTTAAATCTTTGGAT 10420 Query 14646 GAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGC 14698 ||||| ||| ||| ||||||||||||||||| ||||| || | ||||| Sbjct 10421 GAAGGCCAAGCAGTGACTTTTGATGTTGAAGAAGGCCAACGCGGCTTACAAGC 10473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48452071584376