Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002703.1
Length=38347
Score E
Sequences producing significant alignments: (Bits) Value
seq729 143 7e-30
>seq729
Length=25020
Score = 143 bits (158), Expect = 7e-30
Identities = 220/307 (72%), Gaps = 10/307 (3%)
Strand=Plus/Minus
Query 6520 TGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACAC 6579
||||||||||||||||| |||| ||||| ||||| || ||||| ||| | |||||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGAT-TTACGC-TACAC 1267
Query 6580 CACAGA----ACCAAGCAGTAGGTACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAAT 6635
| || | || || || | || ||| |||||||| ||||| | |||| |||
Sbjct 1266 CGCAAATGGTAC--AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT 1209
Query 6636 GCGAATGGCGAA-CGTGAGGCTGATTTAATTAACTGCGTTATTTGGCGACAACAAGCCGA 6694
| || | ||| || ||||| ||||| || || || || |||||||| || ||| ||
Sbjct 1208 -CAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGA 1150
Query 6695 AAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAAC 6754
|| ||||||||| | ||| |||||| || | | || | ||||| || || |||||
Sbjct 1149 AACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAAC 1090
Query 6755 AAGGAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATAC 6814
||| || ||||| || || ||||| ||| || ||||| || ||||||||||| || |
Sbjct 1089 AAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAA 1030
Query 6815 TTTCCAA 6821
|||||||
Sbjct 1029 TTTCCAA 1023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122582749936248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |