Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002703.1 Length=38347 Score E Sequences producing significant alignments: (Bits) Value seq729 143 7e-30 >seq729 Length=25020 Score = 143 bits (158), Expect = 7e-30 Identities = 220/307 (72%), Gaps = 10/307 (3%) Strand=Plus/Minus Query 6520 TGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACAC 6579 ||||||||||||||||| |||| ||||| ||||| || ||||| ||| | ||||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGAT-TTACGC-TACAC 1267 Query 6580 CACAGA----ACCAAGCAGTAGGTACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAAT 6635 | || | || || || | || ||| |||||||| ||||| | |||| ||| Sbjct 1266 CGCAAATGGTAC--AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT 1209 Query 6636 GCGAATGGCGAA-CGTGAGGCTGATTTAATTAACTGCGTTATTTGGCGACAACAAGCCGA 6694 | || | ||| || ||||| ||||| || || || || |||||||| || ||| || Sbjct 1208 -CAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGA 1150 Query 6695 AAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAAC 6754 || ||||||||| | ||| |||||| || | | || | ||||| || || ||||| Sbjct 1149 AACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAAC 1090 Query 6755 AAGGAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATAC 6814 ||| || ||||| || || ||||| ||| || ||||| || ||||||||||| || | Sbjct 1089 AAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAA 1030 Query 6815 TTTCCAA 6821 ||||||| Sbjct 1029 TTTCCAA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122582749936248