Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_002747.1
Length=37667
Score E
Sequences producing significant alignments: (Bits) Value
seq729 129 1e-25
>seq729
Length=25020
Score = 129 bits (142), Expect = 1e-25
Identities = 212/304 (70%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 6169 TGATTAACAACGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGATATACAC 6228
||||||| || |||||| |||| ||||| ||||| || ||||| | | || ||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265
Query 6229 CACA--GAACCAAGCAGTAGGCACATTTGGATTAGCTGTAAATCGTCAGTTTAAGAACGC 6286
|| | | || || || | ||| ||| |||||||| |||||| | |||| |||
Sbjct 1264 CAAATGGTAC--AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCA 1207
Query 6287 CAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTTGGCGACAACAAGCCGAAAA 6346
| || | || || || || || || |||||||| |||||||| || ||| ||||
Sbjct 1206 AAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAAC 1147
Query 6347 TTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATTGGAATAACTGGACGAATTCAAACACG 6406
|||||| || | ||| ||||| || | | || | ||||| || || |||||| |
Sbjct 1146 TTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAG 1087
Query 6407 AAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTT 6466
||| ||||| || || ||||| ||| || ||||| || ||||||||||| || | |||
Sbjct 1086 AAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTT 1027
Query 6467 CCAA 6470
||||
Sbjct 1026 CCAA 1023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120406857327288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |