Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_002747.1 Length=37667 Score E Sequences producing significant alignments: (Bits) Value seq729 129 1e-25 >seq729 Length=25020 Score = 129 bits (142), Expect = 1e-25 Identities = 212/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 6169 TGATTAACAACGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGATATACAC 6228 ||||||| || |||||| |||| ||||| ||||| || ||||| | | || || Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 6229 CACA--GAACCAAGCAGTAGGCACATTTGGATTAGCTGTAAATCGTCAGTTTAAGAACGC 6286 || | | || || || | ||| ||| |||||||| |||||| | |||| ||| Sbjct 1264 CAAATGGTAC--AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCA 1207 Query 6287 CAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTTGGCGACAACAAGCCGAAAA 6346 | || | || || || || || || |||||||| |||||||| || ||| |||| Sbjct 1206 AAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAAC 1147 Query 6347 TTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATTGGAATAACTGGACGAATTCAAACACG 6406 |||||| || | ||| ||||| || | | || | ||||| || || |||||| | Sbjct 1146 TTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAG 1087 Query 6407 AAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTT 6466 ||| ||||| || || ||||| ||| || ||||| || ||||||||||| || | ||| Sbjct 1086 AAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTT 1027 Query 6467 CCAA 6470 |||| Sbjct 1026 CCAA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120406857327288