Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq18 122 8e-23
>seq18
Length=263653
Score = 122 bits (134), Expect = 8e-23
Identities = 230/335 (69%), Gaps = 4/335 (1%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
||||||||| || || || || ||| || | |||||||| | || ||||| |
Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
||| ||| || || | ||| || ||| ||||||||||| ||||| || || ||||| |
Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405
||| | ||| |||| || | || ||||||| || ||||||| | |||||| || |
Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGG 150159
Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT--CCTTCTCTTT 14463
|| || |||| | || || ||||| || || || | || | | ||| ||
Sbjct 150158 CCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTT 150099
Query 14464 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523
| |||| ||| || || ||||| || | |||||||| || ||||| || || || ||
Sbjct 150098 CAT-CTTG-AATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTAT 150041
Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
||| || || || || ||||| || | ||| ||||
Sbjct 150040 AGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTG 150006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482320542146080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |