Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003050.2 Length=40248 Score E Sequences producing significant alignments: (Bits) Value seq729 145 2e-30 >seq729 Length=25020 Score = 145 bits (160), Expect = 2e-30 Identities = 223/313 (71%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 6910 TGATAAATAACGTTGTTTTAGTAGGGCGACTTACAAGAGATGCCGAACTGAGATACAC-G 6968 |||| ||||| ||||| |||| || || | |||| ||| | || | | ||||| | Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 6969 CAATCTAATATTGCGGTTGCTACGTTTACTCTTGCTGTAAACCGTCCATTTAAGAA-CGA 7027 ||| | || | ||||| ||||||||| | ||||| || ||| |||| ||| | | Sbjct 1264 CAAA-TGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAA 1206 Query 7028 GGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTGGAGACAGTTAGCTGAAAA 7087 || ||| | || ||||| |||||||||||||| || || ||| | | | ||| |||| Sbjct 1205 AGCGGGA-ATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAAC 1147 Query 7088 TCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTACAGGAGTAATTCAAACACG 7147 | | ||||||| || ||||| ||||| | || || || || || |||||| | Sbjct 1146 TTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAG 1087 Query 7148 TAGCTATGATAACCAGCAAGGTCAACGTGTTTATGTCACAGAAGTTGTTGCCAGTAATTT 7207 | ||||| || |||||||| |||||||| ||||| |||||||||||||| ||||| Sbjct 1086 AAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTT 1027 Query 7208 TCAACTGTTGGAA 7220 ||| | |||||| Sbjct 1026 CCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128665649715120