Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18 114 1e-20 seq52 86.0 6e-12 seq63 82.4 7e-11 >seq18 Length=263653 Score = 114 bits (126), Expect = 1e-20 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| | ||||| | ||| | || ||||| ||||| | ||||||||||| || || Sbjct 149974 GGTTGAACGCTTTTCTCGGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCA 150033 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || || || | || || || |||||| || || || || ||||| | | Sbjct 150034 AATTGCTATAGAGAATATTCACTCGGAGATGTATAGTCTGCTGATTGACACGTATATTCA 150093 Query 57857 GGACAACGACGAGAAACGTAGAC---TGTTCAACGCGATCGAAACAATGCCC-GCGATCG 57912 || || | | |||| | |||||||||| || || || || || ||| | Sbjct 150094 AGAT---GAAGCGGAACGCCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAA 150150 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA 57972 |||||||| || ||| | | ||||||| | | | | | ||| || Sbjct 150151 G-AAGAAGGCCGATTGGGCTCTACGATGGATAGCGGACAAAAAGTCACCATTCAGAGATC 150209 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || || ||||||||||| |||||||||||||| || |||||||| | || | Sbjct 150210 GACTTGTAGCATTTGCCGCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTT 150269 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | |||||||| || || ||||| || || || |||||||| ||| | || || | Sbjct 150270 TCTGGCTAAAGAAACGTGGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCC 150329 Query 58093 GCGACGAGG 58101 | || |||| Sbjct 150330 GAGATGAGG 150338 Score = 100 bits (110), Expect = 3e-16 Identities = 223/331 (67%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 ||||||||| | | || || ||||||||||| || || | ||||| | ||||| Sbjct 150448 GATCGCATCGAGCAGATCATACGAGAGGCGGTCGCCATTGAGCAAGAGTTCCTTACCGAG 150507 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 || || || || | || |||| ||||| | |||||| | ||||| || | Sbjct 150508 GCACTTCCTGTCAACCTGATCGGCATGAATTGCGTACTGATGTGCCAATACATAGAATAC 150567 Query 58281 GTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAA 58336 || ||||| | | ||| | || ||||| ||| || ||||| | | || Sbjct 150568 GTGGCCGATCGTTTGTTGGTTGA----GTTGGACTGCGACAAGATATACAATGCTGAGAA 150623 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396 |||||| || |||||| | |||| ||||| || || ||||| || || || |||| ||| Sbjct 150624 TCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAGACCAATTTCTTTGAAAGAAA 150683 Query 58397 aGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAG-GACGATATTT 58455 || ||||||| ||||| | |||||| ||| || | |||| | ||| ||| ||| Sbjct 150684 GGTGGGCGAATACCAAAAGTGCGGCGTAATGGGCAATTACAA-TGAGAGTCACG---TTT 150739 Query 58456 TCACTTTGGATGCTGCCTTTTAATGTGTACA 58486 |||| || |||| | |||||||| || ||| Sbjct 150740 TCACCTTAGATGAAGACTTTTAATCTGCACA 150770 >seq52 Length=191592 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 10010 TTGTTACGCTAGAATCGCGCCTCGTTCGGGACTCTCGGTCAAACATAGCATTGACGTGGG 10069 ||| |||| | || || || |||||||| || | || || |||||||| || ||||| Sbjct 29271 TTGCTACGGGCGTATTGCACCCCGTTCGGGTCTTGCAGTTAAGCATAGCATCGATGTGGG 29330 Query 10070 CGCCGGAGTGATCGATCATGACTACAGGGGCAATGTTGGCATAGTTTTGATCAACAATGG 10129 || || |||||||| | |||||||| ||||||||||| |||| ||| |||| ||| Sbjct 29331 AGCTGGCGTGATCGACGAAGACTACAGAGGCAATGTTGGAGTAGTATTGTTCAATTTTGG 29390 Query 10130 AGAATTCAACTT 10141 | || ||| || Sbjct 29391 AAAAGACAAGTT 29402 >seq63 Length=178715 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| || | ||| || | || |||||||| || |||||||||| || | || || Sbjct 171289 TTCAATACGCCGCATGAATAAGTCTGGTATCCAAAGCGCGTAGAACAAATCTCTAGCACG 171230 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || |||||||| |||||| | ||| | || ||||| || | || |||||||| Sbjct 171229 GTTTTCGTCTTTGCCCGTGTTCCTCTTCGCGTGCAGGAAGTCAAAAATATCTGCATGCCA 171170 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | ||| | ||||||||||| ||||||| Sbjct 171169 TGGTTCCAAGTATATAGCAAACGCGCCAGGTCTCT 171135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743242435520