Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003157.5
Length=43106
Score E
Sequences producing significant alignments: (Bits) Value
seq729 172 2e-38
>seq729
Length=25020
Score = 172 bits (190), Expect = 2e-38
Identities = 229/318 (72%), Gaps = 0/318 (0%)
Strand=Plus/Minus
Query 9664 TGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAG 9723
||||||||||||| |||||||||||||| | || ||||| | || | ||||| || |
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265
Query 9724 CGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAA 9783
| | | || ||| || ||||| || | || || || || | |||| | ||||
Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205
Query 9784 ACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCTGGCGACAGTCTGCTGAAAATT 9843
|||| | | || || ||||| || || ||||| || ||||| | || || |||| ||
Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145
Query 9844 TAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTA 9903
|||| || | || ||||| || | | || || || || ||||| || ||| | |
Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085
Query 9904 ACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCC 9963
| || ||||| || ||||| |||||||||||||| |||||||||||||| || |||||||
Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCC 1025
Query 9964 AAATGTTGGAAAGTCGTA 9981
|| | |||||| |||||
Sbjct 1024 AATTATTGGAATCTCGTA 1007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137810798356896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |