Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq729 172 2e-38 >seq729 Length=25020 Score = 172 bits (190), Expect = 2e-38 Identities = 229/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 9664 TGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAG 9723 ||||||||||||| |||||||||||||| | || ||||| | || | ||||| || | Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 9724 CGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAA 9783 | | | || ||| || ||||| || | || || || || | |||| | |||| Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205 Query 9784 ACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCTGGCGACAGTCTGCTGAAAATT 9843 |||| | | || || ||||| || || ||||| || ||||| | || || |||| || Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145 Query 9844 TAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTA 9903 |||| || | || ||||| || | | || || || || ||||| || ||| | | Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085 Query 9904 ACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCC 9963 | || ||||| || ||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCC 1025 Query 9964 AAATGTTGGAAAGTCGTA 9981 || | |||||| ||||| Sbjct 1024 AATTATTGGAATCTCGTA 1007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137810798356896