Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003309.1
Length=53373
Score E
Sequences producing significant alignments: (Bits) Value
seq1627 132 2e-26
>seq1627
Length=6655
Score = 132 bits (146), Expect = 2e-26
Identities = 611/953 (64%), Gaps = 41/953 (4%)
Strand=Plus/Minus
Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464
|| ||||| || || || ||| ||| ||| ||||| || || ||| ||| ||||||
Sbjct 1286 TCTGCTTCTGCCGGAGGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 1227
Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523
| ||||| || || |||||||| || | | | ||||||| || | ||
Sbjct 1226 TCCACCCACGTGAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCA----GCTCTTACG 1171
Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583
|| || | |||| ||||| || || ||||| | || |||| ||| ||||| ||
Sbjct 1170 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 1111
Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642
|||||| || || ||| | | | ||||| || ||||| | ||||| |
Sbjct 1110 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 1051
Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702
| | | || || ||||| || | || ||||| | |||| | || ||
Sbjct 1050 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 1001
Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762
|| | ||||| | | ||| || || ||||||||||| || || ||| ||| ||||
Sbjct 1000 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 941
Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822
| ||||||||| || || || | ||| ||||| || || | ||| ||||| || |
Sbjct 940 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 881
Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882
|||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| |
Sbjct 880 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 821
Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGT--CCAGCGGGCGCGGCGCGGTCACATCGG-TAA 33939
| ||| |||||| ||||| || |||| || |||| || || || ||| | |
Sbjct 820 CTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACG--GCTTTC----CGGCTGA 767
Query 33940 TCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATCAAC 33998
| ||||| || || ||||| || | | || ||||| ||| | | ||| |
Sbjct 766 TGGTCGTACGGACCTTTTTACCCCGGAGAACACC-GGCAAGTCCCATAACCGCCATGAGA 708
Query 33999 CGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTTC 34058
||| | || ||||| | ||||| | || |||||||| || ||| |||||| ||
Sbjct 707 CGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTA 648
Query 34059 GGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGC 34118
|||| ||||| |||| || | | | || |||| ||||| || | |||
Sbjct 647 CGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTC---TTTCTTCAGC 591
Query 34119 ---TCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTG-TGCTGCATG 34174
|||||||| | ||| ||||| | |||||| ||||| || || | || ||| ||
Sbjct 590 CAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTCGCTGTTGC-TG 535
Query 34175 GCGTCGGTAGCCC---GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAA 34231
| |||| | ||||||||||| ||| | |||| | ||| |||||||| |
Sbjct 534 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 475
Query 34232 GGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCC 34291
|| || ||| ||| | | | | ||| || | ||||||||| |||||||
Sbjct 474 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 415
Query 34292 TGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTC 34344
| || ||| | ||| ||| | || || ||||| | |||||||||||
Sbjct 414 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTC 362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 170663576910120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |