Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1627 132 2e-26 >seq1627 Length=6655 Score = 132 bits (146), Expect = 2e-26 Identities = 611/953 (64%), Gaps = 41/953 (4%) Strand=Plus/Minus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || || || ||| ||| ||| ||||| || || ||| ||| |||||| Sbjct 1286 TCTGCTTCTGCCGGAGGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 1227 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523 | ||||| || || |||||||| || | | | ||||||| || | || Sbjct 1226 TCCACCCACGTGAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCA----GCTCTTACG 1171 Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583 || || | |||| ||||| || || ||||| | || |||| ||| ||||| || Sbjct 1170 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 1111 Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642 |||||| || || ||| | | | ||||| || ||||| | ||||| | Sbjct 1110 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 1051 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 | | | || || ||||| || | || ||||| | |||| | || || Sbjct 1050 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 1001 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 || | ||||| | | ||| || || ||||||||||| || || ||| ||| |||| Sbjct 1000 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 941 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 | ||||||||| || || || | ||| ||||| || || | ||| ||||| || | Sbjct 940 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 881 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 |||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| | Sbjct 880 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 821 Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGT--CCAGCGGGCGCGGCGCGGTCACATCGG-TAA 33939 | ||| |||||| ||||| || |||| || |||| || || || ||| | | Sbjct 820 CTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACG--GCTTTC----CGGCTGA 767 Query 33940 TCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATCAAC 33998 | ||||| || || ||||| || | | || ||||| ||| | | ||| | Sbjct 766 TGGTCGTACGGACCTTTTTACCCCGGAGAACACC-GGCAAGTCCCATAACCGCCATGAGA 708 Query 33999 CGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTTC 34058 ||| | || ||||| | ||||| | || |||||||| || ||| |||||| || Sbjct 707 CGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTA 648 Query 34059 GGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGC 34118 |||| ||||| |||| || | | | || |||| ||||| || | ||| Sbjct 647 CGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTC---TTTCTTCAGC 591 Query 34119 ---TCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTG-TGCTGCATG 34174 |||||||| | ||| ||||| | |||||| ||||| || || | || ||| || Sbjct 590 CAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTCGCTGTTGC-TG 535 Query 34175 GCGTCGGTAGCCC---GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAA 34231 | |||| | ||||||||||| ||| | |||| | ||| |||||||| | Sbjct 534 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 475 Query 34232 GGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCC 34291 || || ||| ||| | | | | ||| || | ||||||||| ||||||| Sbjct 474 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 415 Query 34292 TGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTC 34344 | || ||| | ||| ||| | || || ||||| | ||||||||||| Sbjct 414 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170663576910120