Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq18 188 9e-43
seq63 89.7 6e-13
>seq18
Length=263653
Score = 188 bits (208), Expect = 9e-43
Identities = 473/726 (65%), Gaps = 57/726 (8%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
||||||||||| ||||| | |||| || ||||| || || ||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
||||| || || |||||||| | ||||||| || || | | |||| ||| | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
|| | ||| || ||| ||||||| ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
|| || ||||| ||| | ||||| || ||||| ||||||| ||||| | | ||| ||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590
| | |||| ||| | ||| || || ||| | ||||||||| |||
Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAAA 150402
Query 33591 TCGCAGTGCAGACCCT----------CGT---CTCTACTAATT---------AAT----- 33623
|| ||||||||||||| || || || |||| |||
Sbjct 150401 TCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGCA 150342
Query 33624 ----------TCGTTAGA-------------AAACGTGAGTCCGGGCATTAGGCCACGCT 33660
||| ||| ||| ||||| || ||||| || ||||| |
Sbjct 150341 GTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTT 150282
Query 33661 TTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAA 33720
| || ||||| || || ||||| || ||| |||||||| || || || || || ||||
Sbjct 150281 TCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAA 150222
Query 33721 AGGCAATAAGTCTCTCTCCATAACCGGCGC-----TGTCATGTATCCACTTTTGAGCCCA 33775
| || | ||||| |||| | | || | |||| |||||| | |||||||
Sbjct 150221 ATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCA 150164
Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33835
|||||||||||| || || || || || || || ||||| || || || | || |||
Sbjct 150163 ATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTC 150104
Query 33836 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895
||||| || ||| || || |||| ||||||||||| ||||| ||||| || ||
Sbjct 150103 CGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTC 150044
Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955
|| || || || || ||||| || || | |||||| || | ||| | ||| | ||||
Sbjct 150043 TATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAA 149984
Query 33956 TCGTTC 33961
|||||
Sbjct 149983 GCGTTC 149978
>seq63
Length=178715
Score = 89.7 bits (98), Expect = 6e-13
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
|| || ||||| || || |||| || || | |||||| ||| | ||| || |||||
Sbjct 170905 AGCCCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATT 170846
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662
|| || ||||| || | |||| | || ||||| || ||| || || || | | |
Sbjct 170845 CCCTCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTG-TGGCTTGCA 170787
Query 63663 -GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
||||| | ||||| | |||||| |||||||| |||||||||||||| || | ||| ||
Sbjct 170786 AGTTCCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTT 170727
Query 63722 GTACGTCT 63729
|| ||||
Sbjct 170726 ATATGTCT 170719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629784880975680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |