Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18 188 9e-43 seq63 89.7 6e-13 >seq18 Length=263653 Score = 188 bits (208), Expect = 9e-43 Identities = 473/726 (65%), Gaps = 57/726 (8%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||||||||| ||||| | |||| || ||||| || || ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| || || |||||||| | ||||||| || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || ||| ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || || ||||| ||| | ||||| || ||||| ||||||| ||||| | | ||| || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 | | |||| ||| | ||| || || ||| | ||||||||| ||| Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAAA 150402 Query 33591 TCGCAGTGCAGACCCT----------CGT---CTCTACTAATT---------AAT----- 33623 || ||||||||||||| || || || |||| ||| Sbjct 150401 TCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGCA 150342 Query 33624 ----------TCGTTAGA-------------AAACGTGAGTCCGGGCATTAGGCCACGCT 33660 ||| ||| ||| ||||| || ||||| || ||||| | Sbjct 150341 GTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTT 150282 Query 33661 TTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAA 33720 | || ||||| || || ||||| || ||| |||||||| || || || || || |||| Sbjct 150281 TCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAA 150222 Query 33721 AGGCAATAAGTCTCTCTCCATAACCGGCGC-----TGTCATGTATCCACTTTTGAGCCCA 33775 | || | ||||| |||| | | || | |||| |||||| | ||||||| Sbjct 150221 ATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCA 150164 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33835 |||||||||||| || || || || || || || ||||| || || || | || ||| Sbjct 150163 ATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTC 150104 Query 33836 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895 ||||| || ||| || || |||| ||||||||||| ||||| ||||| || || Sbjct 150103 CGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTC 150044 Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955 || || || || || ||||| || || | |||||| || | ||| | ||| | |||| Sbjct 150043 TATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAA 149984 Query 33956 TCGTTC 33961 ||||| Sbjct 149983 GCGTTC 149978 >seq63 Length=178715 Score = 89.7 bits (98), Expect = 6e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 || || ||||| || || |||| || || | |||||| ||| | ||| || ||||| Sbjct 170905 AGCCCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATT 170846 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || ||||| || | |||| | || ||||| || ||| || || || | | | Sbjct 170845 CCCTCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTG-TGGCTTGCA 170787 Query 63663 -GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||| | ||||| | |||||| |||||||| |||||||||||||| || | ||| || Sbjct 170786 AGTTCCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTT 170727 Query 63722 GTACGTCT 63729 || |||| Sbjct 170726 ATATGTCT 170719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629784880975680