Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq18 123 2e-23
seq63 89.7 5e-13
>seq18
Length=263653
Score = 123 bits (136), Expect = 2e-23
Identities = 220/319 (69%), Gaps = 3/319 (1%)
Strand=Plus/Minus
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|| || ||||| ||| || | || ||||| | || ||||| |||| ||| || ||
Sbjct 150324 ATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATC 150265
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC--TTT 11783
| |||||| |||||||||||||| ||||| || || ||||||||||| | || | |
Sbjct 150264 GAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCT 150205
Query 11784 CTCCAT-ATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842
|| || | ||| ||| | ||||||| | |||||||| || ||||| || |||
Sbjct 150204 CTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACG 150145
Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATAT 11902
||| || || || || ||||| || | || ||| | |||| | |||
Sbjct 150144 CATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATAC 150085
Query 11903 GTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCA 11962
|| || || | | ||||||||| || || |||||||| || ||||| ||||| || ||
Sbjct 150084 GTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCG 150025
Query 11963 TAGAAACATCGTGCCTCTG 11981
|| || || || |||||||
Sbjct 150024 TAAAAGCAGCGAGCCTCTG 150006
>seq63
Length=178715
Score = 89.7 bits (98), Expect = 5e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355
|| ||||| || |||| |||||| || | ||||||| ||| | |||||| | || ||
Sbjct 170902 CCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCC 170843
Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415
|| || ||||| |||| |||| || | ||| |||||| || || ||| ||||
Sbjct 170842 TCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTT 170783
Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475
|| | |||||| | ||||| || || || | ||||||||||| |||| ||||||
Sbjct 170782 CCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATAT 170723
Query 38476 GT 38477
||
Sbjct 170722 GT 170721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468500460136640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |