Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18 123 2e-23 seq63 89.7 5e-13 >seq18 Length=263653 Score = 123 bits (136), Expect = 2e-23 Identities = 220/319 (69%), Gaps = 3/319 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||||| ||| || | || ||||| | || ||||| |||| ||| || || Sbjct 150324 ATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATC 150265 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC--TTT 11783 | |||||| |||||||||||||| ||||| || || ||||||||||| | || | | Sbjct 150264 GAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCT 150205 Query 11784 CTCCAT-ATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || | ||| ||| | ||||||| | |||||||| || ||||| || ||| Sbjct 150204 CTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACG 150145 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATAT 11902 ||| || || || || ||||| || | || ||| | |||| | ||| Sbjct 150144 CATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATAC 150085 Query 11903 GTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCA 11962 || || || | | ||||||||| || || |||||||| || ||||| ||||| || || Sbjct 150084 GTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCG 150025 Query 11963 TAGAAACATCGTGCCTCTG 11981 || || || || ||||||| Sbjct 150024 TAAAAGCAGCGAGCCTCTG 150006 >seq63 Length=178715 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || ||||| || |||| |||||| || | ||||||| ||| | |||||| | || || Sbjct 170902 CCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCC 170843 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || || ||||| |||| |||| || | ||| |||||| || || ||| |||| Sbjct 170842 TCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTT 170783 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475 || | |||||| | ||||| || || || | ||||||||||| |||| |||||| Sbjct 170782 CCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATAT 170723 Query 38476 GT 38477 || Sbjct 170722 GT 170721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468500460136640